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BioJava 4 tutorial:

The BioJava 4 tutorial is being hosted and developed at the BioJava tutorial project on github. The BioJava Cookbook offers cookbook-style tutorials about performing many common tasks in BioJava.

BioJava legacy tutorials:

The following tutorials are currently available - more are always welcome! While reading these, you will probably also want to refer to the JavaDoc API documentation ([http://www.biojava.org/docs/api/ latest biojava ]).

• Sequence basics
  • Symbols and SymbolLists
  • Sequences and Features
  • Sequence I/O basics
• Changeability basics
  • ChangeEvent overview
  • ChangeEvent example using Distribution objects
  • Implementing Changeable
• Blast-like parsing (NCBI Blast, WU-Blast, HMMER)
  • Blast-like Parsing Cook Book
  • Blast2HTML Example Application
• Walkthrough of one of the dynamic programming examples
• Installing BioSQL
• Approaches to Web Development for Bioinformatics

The BioJava Legacy Cookbook offers cookbook-style tutorials about performing many common tasks in BioJava 1.

Additionally, a number of small demo programs can be found in the demos directory of the BioJava source distribution.

For the German audience: The Java Magazin published in the issue 2.2005 an article about BioJava which is also available online.