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Introducing

Code Ocean 4: Trusted Agents

Trusted Computational Research. For Humans and AI.

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Trusted by thousands of computational scientists in Biotech and Pharma:

It takes a lot of time to work manually, or to build and maintain bespoke systems

Collaboration can be slow and painful within and between computational projects

It’s hard to consistently reproduce result data across different compute environments

CompBio & bioinformatics often needs manual processes & custom-built systems

Code Ocean installs into your existing cloud architectures and gets everyone onto the same page

Set up environments and provision compute

Build what you need with built-in tools and automated Dockerfile generation. Develop in your preferred cloud workstation and attach data of any size. Deploy to the cloud in one click, and shut down automatically when idle.

Read about Capsules

Collaborate with others on powerful workflows

Develop computational research with others, from straightforward analysis to parallelized bioinformatics pipelines. Share and co-develop any Compute Capsule, Pipeline, or Data asset within your deployment.

Read about pipelines

Get automated result provenance and reproducibility

See the provenance of all results with the Lineage Graph and preserve everything needed for full reproducibility. All development tracked with Git, and no lock-in: export anything, at any time, and run it anywhere else.

Read about the Lineage Graph

What our customers say

“Code Ocean's self-service capabilities make it easy for our scientists to do their work reproducibly. New users to the platform can get far with just a little support, giving our engineers time to focus on domain-specific challenges.”

Dr. David Feng
Director of Scientific Computing, Allen Institute

What our customers say

“Code Ocean totally solves tracking and reproducing analysis for researchers and increases trust in the results.”

Benjamin Haibe-Kains, Ph.D
Senior Scientist, Princess Margaret Cancer Centre

What our customers say

“Code Ocean sped up our internal image pre-processing computational workflow by at least 10x, improving collaboration and productivity between our global teams ... removing the need for painful cloud computing infrastructure set up.”

Dimitris Polychronopoulos
Director of In Silico Biology, Ochre Bio

What our customers say

“Code Ocean opens the door to automating and scaling major aspects of the research process. With the Code Ocean platform, our scientists can focus on their core competencies, do more, think bigger, and achieve higher goals.”

Yuval Kalugny
VP Engineering, CytoReason

What our customers say

“The biggest win at Lantern is the pipeline we developed, and the value of Code Ocean was that it allowed the whole team to work together ... we had a shared environment for collaboration.”

Peter Carr
Principal Platform Architect, Lantern Pharma

New: machine learning features

We’re launching new features that make it easier for computational biologists, bioinformaticians, and ML engineers to work together in training, validating, and using ML models alongside their existing workflows.

Read the announcement

Built for Computational Science

Data analysis

Data analysis

Use ready-made template Compute Capsules to analyze your data, develop your data analysis workflow in your preferred language and IDE using any open-source software, and take advantage of built-in containerization to guarantee reproducibility.
Data management

Data management

Manage your organization's data and control who has access to it. Built specifically to meet all FAIR principles, data management in Code Ocean uses custom metadata and controlled vocabularies to ensure consistency and improve searchability.
Bioinformatics pipelines

Bioinformatics pipelines

Build, configure and monitor bioinformatics pipelines from scratch using a visual builder for easy set-up. Or, import from nf-core in one click for instant access to a curated set of best practice analysis pipelines. Runs on AWS Batch out-of-the-box, so your pipelines scale automatically. No setup needed.
ML models

ML model development

Code Ocean is uniquely suited for Artificial Intelligence, Machine Learning, Deep Learning, and Generative AI. Install GPU-ready environments and provision GPU resources in a few clicks. Integration with MLFlow allows you to develop models, track parameters, manage models from development to production, while enjoying out-of-the-box reproducibility and lineage.
Multiomics

Multiomics

Analyze and work with large multimodal datasets efficiently using scalable compute and storage resources, cached packages for R and Python, preloaded multiomics analysis software that works out of the box and full lineage and reproducibility.
Imaging

Imaging

Process images using a variety of tools: from dedicated desktop applications to custom-written deep learning pipelines, from a few individual files to petabyte-sized datasets. No DevOps required, always with lineage.
Cloud management

Cloud management

Code Ocean makes it easy to manage data and provision compute: CPUs, GPUs, and RAM. Assign flex machines and dedicated machines to manage what is available to your users. Spot instances, idleness detection, and automated shutdown help reduce cloud costs.
Data/model provenance

Data/model provenance

Keep track of all data and results with automated result provenance and lineage graph generation. Assess reproducibility with a visual representation of every Capsule, Pipeline, and Data asset involved in a computation.

Data analysis

Use ready-made template Compute Capsules to analyze your data, develop your data analysis workflow in your preferred language and IDE using any open-source software, and take advantage of built-in containerization to guarantee reproducibility.

Data management

Manage your organization's data and control who has access to it. Built specifically to meet all FAIR principles, data management in Code Ocean uses custom metadata and controlled vocabularies to ensure consistency and improve searchability.

Bioinformatics pipelines

Build, configure and monitor bioinformatics pipelines from scratch using a visual builder for easy set-up. Or, import from nf-core in one click for instant access to a curated set of best practice analysis pipelines. Runs on AWS Batch out-of-the-box, so your pipelines scale automatically. No setup needed.

ML model development

Code Ocean is uniquely suited for Artificial Intelligence, Machine Learning, Deep Learning, and Generative AI. Install GPU-ready environments and provision GPU resources in a few clicks. Integration with MLFlow allows you to develop models, track parameters, manage models from development to production, while enjoying out-of-the-box reproducibility and lineage.

Multiomics

Analyze and work with large multimodal datasets efficiently using scalable compute and storage resources, cached packages for R and Python, preloaded multiomics analysis software that works out of the box and full lineage and reproducibility.

Imaging

Process images using a variety of tools: from dedicated desktop applications to custom-written deep learning pipelines, from a few individual files to petabyte-sized datasets. No DevOps required, always with lineage.

Cloud management

Code Ocean makes it easy to manage data and provision compute: CPUs, GPUs, and RAM. Assign flex machines and dedicated machines to manage what is available to your users. Spot instances, idleness detection, and automated shutdown help reduce cloud costs.

Data/model provenance

Keep track of all data and results with automated result provenance and lineage graph generation. Assess reproducibility with a visual representation of every Capsule, Pipeline, and Data asset involved in a computation.

Product features

Capsules

Package your code, data and environment in a single object.

Capsules

Pipelines

Connect, automate, parallelize, and scale computational work.

Pipelines

Models

Integrated MLflow for tracking, registration, lineage, & inference.

Models

Data

Manage all your Data assets in the cloud and from multiple sources.

Data

Lineage Graph

An immutable record of how your results are generated.

Lineage Graph

Collections

Gather and organize your work to make it visible and accessible.

Collections

Apps

Use no-code bioinformatics apps, or build new ones from scratch.

Apps

Admin

A single pane of glass for your entire computational R&D cloud.

Admin panel

Who is Code Ocean For?

IT & Engineering

Get computational teams up and running faster in the cloud, less dependent on IT and engineering resources, and using standardized computing environments across your organization.

Learn more

Computational Scientists

Code Ocean makes it easy for computational scientists and bioinformaticians to perform analysis, build pipelines, and reproduce their results in a secure cloud-based environment.

Learn more

R&D Leadership

Code Ocean creates an immutable, reproducible, and traceable scientific system of record. Prove what you discovered, when you discovered it, and how—without any additional work or platform lock-in.

Learn more

The latest webinars from Code Ocean

Webinar Managing ML models in bioinformatics Watch webinar

Webinar How to create reproducible environments for multi-omics Watch webinar

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