GV

GeezerVison

The World Wide Web, restored to 800 pixels of glory.

Home|About|Gaming cabinet|Archives|How it works|Starter sites

On this site

  • Main page
  • Contents
  • Current events
  • Random article
  • About Wikipedia
  • Contact us
  • Help
  • Learn to edit
  • Community portal
  • Recent changes
  • Upload file
  • Special pages
  • Search
  • Donate

This view

  • Original page
  • New address

GeezerVison is showing en.wikipedia.org — Side chain - Wikipedia

(Redirected from Side chains)
This article is about the chemistry term. For other uses, see Side-chain (disambiguation).
This article is about the side chain of any type of long molecule. For replacement of a hydrogen atom on a hydrocarbon chain, see Substituent.
IUPAC definition

Branch
Side-chain
Pendant chain
An oligomeric or polymeric offshoot from a macromolecular chain.

Notes

  1. An oligomeric branch may be termed a short-chain branch.
  2. A polymeric branch may be termed a long-chain branch.[1]

In organic chemistry and biochemistry, a side chain or pendant chain (not to be confused with pendant group or side group) is a chemical group that is attached to a core part of the molecule called the "main chain" or backbone. It is one factor in determining a molecule's properties and reactivity.[2]

Conventions

A L-amino acid, with the R-group used as a placeholder for a side chain.

The placeholder R is often used as a generic placeholder for side chains in structural formulae (see R group (chemistry)). Otherwise, X, Y, or Z are often used, X particularly for halogens.

History

The R symbol was introduced by 19th-century French chemist Charles Frédéric Gerhardt, who advocated its adoption on the grounds that it would be widely recognizable and intelligible given its correspondence in multiple European languages to the initial letter of "root" or "residue": French racine ("root") and résidu ("residue"), these terms' respective English translations along with radical (itself derived from Latin radix below), Latin radix ("root") and residuum ("residue"), and German Rest ("remnant" and, in the context of chemistry, both "residue" and "radical").[3]

Usage

Organic chemistry

In polymer science, the side chain of an oligomeric or polymeric offshoot extends from the backbone chain of a polymer. Side chains have noteworthy influence on a polymer's properties, mainly its crystallinity and density. An oligomeric branch may be termed a short-chain branch, and a polymeric branch may be termed a long-chain branch. Side groups are different from side chains; they are neither oligomeric nor polymeric.[4]

Biochemistry

In proteins, which are composed of amino acid residues, the side chains are attached to the alpha-carbon atoms of the amide backbone. The side chain connected to the alpha-carbon is specific for each amino acid and is responsible for determining properties such as charge and polarity, that then are responsible for many of the interactions which lead to proper protein folding and function.[5] Spatial positions of side-chain atoms can be predicted based on protein backbone geometry using computational tools for side-chain reconstruction.[6]

A table of the proteinogenic amino acid side chains, which would replace the R-group placeholder.

See also

  • Alkyl
  • Backbone-dependent rotamer library
  • Backbone chain
  • Branching (polymer chemistry)
  • Functional group
  • Pendant group
  • Residue (chemistry)
  • R group (chemistry)
  • Substituent

References

  1. ↑ Jenkins, A. D.; Kratochvíl, P.; Stepto, R. F. T.; Suter, U. W. (1996). "Glossary of basic terms in polymer science (IUPAC Recommendations 1996)" (PDF). Pure and Applied Chemistry. 68 (12): 2287–2311. doi:10.1351/pac199668122287. S2CID 98774337.
  2. ↑ Wade, L.G. (2010). Organic Chemistry, 7th Edition. Upper Saddle River, NJ: Pearson Prentice Hall. pp. 70–78. ISBN 978-0-321-59231-6.
  3. ↑ Jensen W.B., Journal of Chemical Education 87, 360 (2010)
  4. ↑ IUPAC, Compendium of Chemical Terminology, 5th ed. (the "Gold Book") (2025). Online version: (2006–) "branch (side chain, pendant chain)". doi:10.1351/goldbook.B00720
  5. ↑ Voet, Donald; Voet, Judith; Pratt, Charlotte (2013). Fundamentals of Biochemistry: Life at the Molecular Level (Fourth ed.). Hoboken, NJ: John Wiley & Sons, Inc. ISBN 9781118129180.
  6. ↑ Badaczewska-Dawid, Aleksandra E.; Kolinski, Andrzej; Kmiecik, Sebastian (2019-12-26). "Computational reconstruction of atomistic protein structures from coarse-grained models". Computational and Structural Biotechnology Journal. 18: 162–176. doi:10.1016/j.csbj.2019.12.007. ISSN 2001-0370. PMC 6961067. PMID 31969975.
Retrieved from "https://en.wikipedia.org/w/index.php?title=Side_chain&oldid=1383987817"
Categories:
  • Organic chemistry
  • Biochemistry
  • Protein structure
Hidden categories:
  • Articles with short description
  • Short description is different from Wikidata
  • Articles containing French-language text
  • Articles containing Latin-language text
  • Articles containing German-language text
You are visitor 01402503 — GeezerVison does not store the pages you look up.
Best viewed with Netscape Navigator 4.7 or Internet Explorer 6 at 800×600. No cookies required.