GeezerVisonThe World Wide Web, restored to 800 pixels of glory. |
| Home|About|Gaming cabinet|Archives|How it works|Starter sites |
GeezerVison is showing github.com — pointmatch: add functions for fast and deep copy by RussTorres · Pull Request #155 · AllenInstitute/render-python Conversation
Collaborator
This adds a function to "copy" pointmatch dictionaries such that changes to the match arrays of the original do not affect the copy. As background for why this is useful, BigFetA has use cases where it transforms pointmatches in-place. This becomes a problem when doing multiple-step in-memory alignment or trying to interrogate residuals. To be on the safe side I've been copying the matches before each step, which is very expensive on large alignments. The test I added uses the same match objects (via copy/paste) as the integration test, but I am surprised to see that the format of the dictionaries doesn't match what I was seeing in real pointmatch collections, e.g.
This actually doesn't affect the way I have the copy implemented, but I'm not sure if this is a long-standing typo or something that changed without us noticing.
Sorry, something went wrong. Uh oh!
There was an error while loading. Please reload this page. All reactions
fcollman
approved these changes
Merged
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
ReviewersUh oh!
There was an error while loading. Please reload this page. AssigneesNo one assignedLabels
None yet
ProjectsMilestoneNo milestoneDevelopmentSuccessfully merging this pull request may close these issues. Uh oh!
There was an error while loading. Please reload this page. Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later. |
| You are visitor 01402503 — GeezerVison does not store the pages you look up. Best viewed with Netscape Navigator 4.7 or Internet Explorer 6 at 800×600. No cookies required. |