Issues

Issues

• Colorectal drug responses are 100× too small

  PNNL-CompBio/coderdata#535 · opened on Nov 11, 2026 · 2.4 new build

• Sarcoma drug responses are attached to tumor samples instead of organoids

  PNNL-CompBio/coderdata#534 · opened on Nov 11, 2026 · 2.4 new build

• Proteomics values are on different scales across datasets

  PNNL-CompBio/coderdata#533 · opened on Nov 11, 2026 · 2.4 new build
  2

• Mutation variant classifications aren't consistent MAF names across datasets

  PNNL-CompBio/coderdata#532 · opened on Nov 11, 2026 · 2.4 new build
  1

• Inconsistent study and source labels within bladder, pancreatic and colorectal

  PNNL-CompBio/coderdata#531 · opened on Nov 11, 2026 · 2.4 new build

• Schema needs required: true parameter for all expected columns

  PNNL-CompBio/coderdata#530 · opened on Nov 10, 2026 · 2.4 Package Update

• ex vivo copy number files missing source column

  PNNL-CompBio/coderdata#529 · opened on Nov 10, 2026 · 2.4 new build
  1

• Weird fit_r2 to fit_auc/auc behaviour for some experiment features

  PNNL-CompBio/coderdata#527 · opened on Nov 3, 2026
  4

• Document cNF, phosphoproteomics, and phosphosites on the docs site

  PNNL-CompBio/coderdata#498 · opened on Sep 22, 2026 · 2.5

• Add beatAML phosphoproteomics

  PNNL-CompBio/coderdata#496 · opened on Sep 22, 2026 · 2.5

• Publish the phosphosites reference to Figshare

  PNNL-CompBio/coderdata#495 · opened on Sep 22, 2026 · 2.5

• Publish the cNF dataset to Figshare and enable it in the release

  PNNL-CompBio/coderdata#494 · opened on Sep 22, 2026 · 2.5

• Update coderdata package split function to handle new datasets

  PNNL-CompBio/coderdata#478 · opened on Jul 6, 2026 · 2.5

• coderdata documentation missing argument description for balance

  PNNL-CompBio/coderdata#457 · opened on Aug 26, 2025 · 2.4 Documentation
  1

• Create script to process crown biosciences data

  PNNL-CompBio/coderdata#368 · opened on Apr 25, 2025 · 2.5

• Automate push of the package to pypi upon new version via github actions

  Feature

  PNNL-CompBio/coderdata#351 · opened on Apr 9, 2025 · 2.5
  1

• Consider adding boolean to determine if ec50 is valid

  PNNL-CompBio/coderdata#325 · opened on Feb 20, 2025 · 2.5

• Transition print() statements in API to logging module

  Feature

  PNNL-CompBio/coderdata#317 · opened on Jan 30, 2025 · 2.5

• Download function is too slow

  PNNL-CompBio/coderdata#312 · opened on Jan 27, 2025 · 2.5
  3

• Add NCI60 omics dataset to CoderData

  PNNL-CompBio/coderdata#306 · opened on Jan 21, 2025 · 2.5

• update tests

  PNNL-CompBio/coderdata#274 · opened on Dec 18, 2024 · 2.5
  1

• Add in additional cell line proteomics data

  PNNL-CompBio/coderdata#207 · opened on Sep 18, 2024 · 2.5

• Drug Mechanism of Action

  PNNL-CompBio/coderdata#203 · opened on Aug 21, 2024 · 2.5
  4

• add in kids first brain tumor cell line data

  PNNL-CompBio/coderdata#144 · opened on Apr 9, 2024 · 2.5
  2

• add in sanger drug combination data

  PNNL-CompBio/coderdata#94 · opened on Feb 6, 2024 · 2.5
  2