GeezerVisonThe World Wide Web, restored to 800 pixels of glory. |
| Home|About|Gaming cabinet|Archives|How it works|Starter sites |
GeezerVison is showing github.com — PRMS-Python/prms_python/scripts/prmspy.py at master · PRMS-Python/PRMS-Python Expand file tree/ Copy pathprmspy.pyMore file actions 225 lines (174 loc) · 6.87 KB / Copy pathprmspy.pyFile metadata and controls225 lines (174 loc) · 6.87 KB 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 import click import io import itertools import json import matplotlib.pyplot as plt import numpy as np import os import re from datetime import datetime from matplotlib.backends.backend_pdf import PdfPages from ..scenario import ScenarioSeries from ..util import load_data, load_statvar, nash_sutcliffe @click.group() def prmspy(): "access PRMS-Python functionality from the command line" click.echo('\n*** Welcome to PRMS-Python! ***\n') @prmspy.command() @click.argument('base_data_dir', nargs=1) @click.option('--params', '-p', nargs=1, type=str, multiple=True, help='list of parameters to edit') @click.option('--scale_vals', '-s', nargs=1, type=str, multiple=True, help='list of scaling values; must be divisible by len(params), ' 'e.g. "[0.8, 0.9, 1.0, 1.1, 1.2]"' ) @click.option('--output-dir', '-o', nargs=1, type=str, help='directory where scenario data should be written') @click.option('--title', '-t', nargs=1, type=str, help='title for this parameter scaling experiment') @click.option('--description', '-d', nargs=1, type=str, help='description for this parameter scaling experiment') @click.option('--run-prms', is_flag=True, help='run PRMS after creating scenario input data') @click.option('--prms-exec', '-e', default='prms', help='PRMS executable to be used, eg prmsV4') @click.option('--nproc', '-n', default=None, type=int, help='number of processors to use') @click.option('--analyze-output', is_flag=True, help='create analysis of model output in the form of a ' '"Nash-Sutcliffe Matrix"') def param_scale_sim(base_data_dir, params, scale_vals, output_dir, title, description, run_prms, prms_exec, nproc, analyze_output): 'Provide params and scaling values; run PRMS scenarios' # scale_vals must be divisible by the number of params # valid_input = len(scale_vals) % len(params) == 0 print(scale_vals) scale_vals = [eval(el) for el in scale_vals] # if not valid_input: # raise IOError('The length of scale_vals list is not divisible ' # 'by the length of the parameter list') if not output_dir: output_dir =\ re.sub(r'\/|\\\\', '-', base_data_dir) + \ '-modified-params-' + datetime.now().isoformat() os.mkdir(output_dir) s = ScenarioSeries( base_data_dir, output_dir, title=title, description=description ) def _scale_fun(val): def scale(x): return x * val return scale # assign scaling values to parameter names # dimensionality correctness guaranteed from valid_input check pval_len = len(scale_vals)/len(params) def _slice(idx): return slice(pval_len*idx, pval_len*(idx+1)) param_val_dict = { param: zip(itertools.repeat(param), scale_vals[idx]) for idx, param in enumerate(params) } # param_val_dict = { # param: zip(itertools.repeat(param, pval_len), scale_vals[_slice(idx)]) # for idx, param in enumerate(params) # } # for every combination we need to iterate over every value of # each param we have combinations = itertools.product(*param_val_dict.values()) # now build the scenario_list with re-callable titles scenario_list = [] for combo in combinations: scenario_def = { 'title': _build_title(combo) } scenario_def.update( { param: _scale_fun(val) for param, val in combo } ) scenario_list.append(scenario_def) s.build(scenario_list) if run_prms: s.run(prms_exec=prms_exec, nproc=nproc) if analyze_output: print('\n** Sorry, analyze_output has not yet been implemented! **\n') @prmspy.command() @click.argument('data_dir', nargs=1) @click.argument('output_pdf_path', nargs=1) def nash_sutcliffe_matrix(data_dir, output_pdf_path): 'Save a PDF of the Nash-Sutcliffe created from <data_dir> to <output_pdf_path>' observed = load_data( os.path.join(data_dir, 'base_inputs', 'data') ).runoff_1 series_metadata = json.loads( io.open(os.path.join(data_dir, 'series_metadata.json')).read() ) modeled_flows = { title: load_statvar( os.path.join(data_dir, uu, 'outputs', 'statvar.dat') ).basin_cfs_1 for uu, title in series_metadata['uuid_title_map'].items() } titles = list(modeled_flows.keys()) params = [pair.split(':')[0] for pair in titles[0].split('|')] if len(params) > 2: print('This command is only supported for two covarying parameters!') exit(1) p1_vals = sorted({ float(pair[0].split(':')[1]) for pair in map(lambda t: t.split('|'), titles) }) p2_vals = sorted({ float(pair[1].split(':')[1]) for pair in map(lambda t: t.split('|'), titles) }) print(p1_vals) nash_sutcliffe_mat = np.zeros((len(p1_vals), len(p2_vals))) for p1_idx, p1_val in enumerate(p1_vals): for p2_idx, p2_val in enumerate(p2_vals): coord = (p1_idx, p2_idx) title = '{p1}:{p1val:.3f}|{p2}:{p2val:.3f}'.format( p1=params[0], p2=params[1], p1val=p1_val, p2val=p2_val ) modeled = modeled_flows[title] nash_sutcliffe_mat[coord] = nash_sutcliffe(observed, modeled) with PdfPages(output_pdf_path) as pdf: fig, ax = plt.subplots() cax = ax.matshow(nash_sutcliffe_mat, cmap='viridis') ytix = p1_vals xtix = p2_vals plt.yticks(range(len(ytix)), ytix) plt.xticks(range(len(xtix)), xtix) ax.xaxis.set_ticks_position('bottom') plt.ylabel(params[0].replace('"', '')) plt.xlabel(params[1].replace('"', '')) for i, j in itertools.product(range(len(ytix)), range(len(xtix))): plt.text(j, i, '%.2f' % nash_sutcliffe_mat[i, j], horizontalalignment='center', color='w' if nash_sutcliffe_mat[i, j] < np.mean(nash_sutcliffe_mat.flatten()) else 'k') plt.title('Nash-Sutcliffe Matrix') plt.grid(b=False) fig.colorbar(cax) pdf.savefig() plt.close() def _build_title(combo): ''' Given a list of tuples with parameter/scale_val pairs, build the title for the parameterization. For example, >>> combo = [('snow_adj', 0.8), ('rad_trncf', 0.9), ('jh_coef', 1.1)] >>> assert _build_title(combo) ==\ '"snow_adj":0.800|"rad_trncf":0.900|"jh_coef":1.100' ''' return '|'.join('"{0}":{1:.3f}'.format(param, val) for param, val in combo) |
| You are visitor 01402503 — GeezerVison does not store the pages you look up. Best viewed with Netscape Navigator 4.7 or Internet Explorer 6 at 800×600. No cookies required. |