GeezerVisonThe World Wide Web, restored to 800 pixels of glory. |
| Home|About|Gaming cabinet|Archives|How it works|Starter sites |
GeezerVison is showing github.com — PRMS-Python/test/test_prms_python.py at master · PRMS-Python/PRMS-Python Expand file tree/ Copy pathtest_prms_python.pyMore file actions 476 lines (352 loc) · 14 KB / Copy pathtest_prms_python.pyFile metadata and controls476 lines (352 loc) · 14 KB 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301 302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319 320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337 338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355 356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371 372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389 390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407 408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425 426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443 444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461 462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 from copy import copy import json import glob import numpy as np import os import re import shutil import unittest from difflib import Differ from numpy.testing import assert_array_almost_equal from prms_python import ( modify_params, Parameters, Scenario, ScenarioSeries, Simulation, SimulationSeries, Data ) OPJ = os.path.join class TestSimulationSeries(unittest.TestCase): ''' Expect that a SimulationSeries ''' def setUp(self): self.test_model_data_dir = os.path.join( 'test', 'data', 'models', 'lbcd' ) self.simulation_dir = os.path.join(self.test_model_data_dir, 'tmp_sim') def tearDown(self): for g in glob.glob(OPJ(self.simulation_dir, '*')): shutil.rmtree(g) def test_simulation_series(self): tdd = self.test_model_data_dir data = Data(OPJ(tdd, 'data')) base_parameters = Parameters(OPJ(tdd, 'parameters')) def _copy_mod(base_parameters, val): ret = copy(base_parameters) ret['dday_intcp'][:] = val return ret parameters_gen = ( (val, _copy_mod(base_parameters, val)) for val in (-50, -40, -30) ) control_path = OPJ(tdd, 'control') series = SimulationSeries( Simulation.from_data( data, parameters, control_path, self.simulation_dir + str(val) ) for val, parameters in parameters_gen ) outputs = list(series.run().outputs_iter()) self.assertEqual(len(series), 3) self.assertEqual(len(outputs), 3) for out in outputs: sdir = out['simulation_dir'] assert os.path.isdir(out['simulation_dir']) assert os.path.exists(OPJ(sdir, 'outputs', 'statvar.dat')) assert os.path.exists(OPJ(sdir, 'inputs', 'data')) assert os.path.exists(OPJ(sdir, 'inputs', 'parameters')) shutil.rmtree(sdir) class TestSimulation(unittest.TestCase): """ Simulations should take a base directory and return a simulation directory """ def setUp(self): self.test_data_dir = os.path.join('test', 'data') self.test_model_data_dir = os.path.join( 'test', 'data', 'models', 'lbcd' ) self.simulation_dir = os.path.join(self.test_data_dir, 'tmp_sim') def tearDown(self): if os.path.exists(self.simulation_dir): shutil.rmtree(self.simulation_dir) def test_simulation_no_simdir(self): "Simulation should run and write outputs to input directory when simulation_dir is not specified" s = Simulation(self.test_model_data_dir) s.run() g = [ os.path.basename(f) for f in glob.glob(os.path.join(self.test_model_data_dir, '*')) ] self.assertIn('prms_ic.out', g) self.assertIn('prms.out', g) self.assertIn('statvar.dat', g) def test_simulation_w_simdir(self): "Simulation should create sim dir with inputs and outputs directory when simulation_dir is specified" s = Simulation(self.test_model_data_dir, self.simulation_dir) s.run() gs = [ os.path.basename(f) for f in glob.glob(os.path.join(self.simulation_dir, '*')) ] self.assertIn('inputs', gs) self.assertIn('outputs', gs) assert_valid_input_dir( self, os.path.join(self.simulation_dir, 'inputs') ) assert_valid_output_dir( self, os.path.join(self.simulation_dir, 'outputs') ) def test_simulation_from_data(self): """ Use @classmethod from_data to build a simulation from Parameters and Data instances """ tdd = self.test_model_data_dir data = Data(OPJ(tdd, 'data')) parameters = Parameters(OPJ(tdd, 'parameters')) ctrl = OPJ(tdd, 'control') test_dir = OPJ(tdd, 'test-sim-dir') if os.path.isdir(test_dir): shutil.rmtree(test_dir) s = Simulation.from_data(data, parameters, ctrl, test_dir) s.run() g = [ os.path.basename(f) for f in glob.glob(OPJ(test_dir, 'outputs', '*')) ] self.assertIn('prms_ic.out', g) self.assertIn('prms.out', g) self.assertIn('statvar.dat', g) # clean up shutil.rmtree(test_dir) class TestScenario(unittest.TestCase): def setUp(self): self.test_data_dir = os.path.join('test', 'data') self.test_model_data_dir = os.path.join( 'test', 'data', 'models', 'lbcd' ) self.scenario_dir = os.path.join(self.test_data_dir, 'tmp_scenario') def tearDown(self): if os.path.exists(self.scenario_dir): shutil.rmtree(self.scenario_dir) def test_create_scenario(self): """ a simulation setup should create a simulation directory with correct scenario data """ s = Scenario( self.test_model_data_dir, self.scenario_dir, title='Scenario Uno', description='test scenario for prms_python' ) param_mods = { 'snow_adj': lambda x: 1.1*x, 'rad_trncf': lambda x: 0.9*x } s.build(param_mod_funs=param_mods) assert_valid_input_dir(self, self.scenario_dir) # os.path.join(self.scenario_dir, 'inputs')) s.run() assert_valid_input_dir( self, os.path.join(self.scenario_dir, 'inputs') ) assert_valid_output_dir( self, os.path.join(self.scenario_dir, 'outputs') ) md_json_path = os.path.join(self.scenario_dir, 'metadata.json') assert os.path.isfile(md_json_path) md_json = json.loads(open(md_json_path).read()) assert md_json['title'] == 'Scenario Uno' assert md_json['description'] == 'test scenario for prms_python' assert 'start_datetime' in md_json assert 'end_datetime' in md_json assert 'mod_funs_dict' in md_json p_base = Parameters( os.path.join(self.test_model_data_dir, 'parameters') ) p_scen = Parameters( os.path.join(self.scenario_dir, 'inputs', 'parameters') ) assert_array_almost_equal(p_base['snow_adj']*1.1, p_scen['snow_adj']) assert_array_almost_equal(p_base['rad_trncf']*0.9, p_scen['rad_trncf']) class TestScenarios(unittest.TestCase): def setUp(self): self.test_data_dir = os.path.join('test', 'data') self.test_model_data_dir = os.path.join( self.test_data_dir, 'models', 'lbcd' ) self.scenarios_dir = os.path.join(self.test_data_dir, 'tmp_scenarios') def tearDown(self): if os.path.exists(self.scenarios_dir): shutil.rmtree(self.scenarios_dir) def test_scenario_series(self): "create_many_simulations should create many simulation directories and correct data" s = ScenarioSeries( self.test_model_data_dir, self.scenarios_dir, title='scenario series uno', description=''' Each scenario is given a title with the schema '"<param_name1>":<scale_value1>|"<param_name2>":<scale_value2>', which can be easily parsed into a Python dictionary later. We use the pipe instead of comma for easier visual inspection, though this is entirely up to the user/developer. The scenario consists of parameters scaled for each of the specified parameters. ''' ) def _scale_param(val): def scale_by_val(x): return x*val return scale_by_val scale_arange = np.arange(0.7, 0.9, 0.1) series_funs = [ { 'title': '"rad_trncf":{0:.1f}|"snow_adj":{0:.1f}'.format(val), 'rad_trncf': _scale_param(val), 'snow_adj': _scale_param(val) } for val in scale_arange ] s.build(series_funs) g_series = glob.glob(os.path.join(self.scenarios_dir, '*')) # this should be 5 because of series_metadata.json and inputs_dir assert len(g_series) == 5, g_series uuid_pattern = re.compile( r'^[0-9a-f]{8}-[0-9a-f]{4}-4[0-9a-f]{3}-[89ab][0-9a-f]{3}-[0-9a-f]{12}$' ) uuid_dir_count = 0 non_uuid_dir_count = 0 series_dirs = [] found_metadata = False for d in g_series: # XXX TODO this is in flux. at this point maybe all will be dirs if os.path.isdir(d): # at this point the files are in the base scenario dir; # they will be moved later when the scenario is run assert_valid_input_dir(self, os.path.join(d)) if re.match(uuid_pattern, os.path.basename(d)): uuid_dir_count += 1 assert re.match(uuid_pattern, os.path.basename(d)), os.path.basename(d) else: non_uuid_dir_count += 1 else: found_metadata = True series_dirs.append(d) assert uuid_dir_count == 3 assert non_uuid_dir_count == 1 assert found_metadata s.run() g_series = glob.glob(os.path.join(self.scenarios_dir, '*')) series_md_path = os.path.join( self.scenarios_dir, 'series_metadata.json' ) self.assertIn(series_md_path, g_series) series_md = json.loads(open(series_md_path).read()) dir_titles = series_md['uuid_title_map'] titles = dir_titles.values() assert '"rad_trncf":0.7|"snow_adj":0.7' in titles assert '"rad_trncf":0.8|"snow_adj":0.8' in titles assert '"rad_trncf":0.9|"snow_adj":0.9' in titles p_base = Parameters( os.path.join(self.test_model_data_dir, 'parameters') ) for g in g_series: if os.path.isdir(g) and 'input' not in g: assert_valid_output_dir(self, os.path.join(g, 'outputs')) md = json.loads(open(os.path.join(g, 'metadata.json')).read()) title = md['title'] scale_vals = eval('{' + title.replace('|', ',') + '}') p_scen = Parameters(os.path.join(g, 'inputs', 'parameters')) rad_base = p_base['rad_trncf'] rad_scen = p_scen['rad_trncf'] snow_base = p_base['snow_adj'] snow_scen = p_scen['snow_adj'] assert_array_almost_equal( rad_base*scale_vals['rad_trncf'], rad_scen) assert_array_almost_equal( snow_base*scale_vals['snow_adj'], snow_scen) def assert_valid_input_dir(test_case, d): gs = [ os.path.basename(f) for f in glob.glob(os.path.join(d, '*')) ] test_case.assertIn('control', gs, d) test_case.assertIn('parameters', gs, d) test_case.assertIn('data', gs, d) def assert_valid_output_dir(test_case, d): go = [ os.path.basename(f) for f in glob.glob(os.path.join(d, '*')) ] test_case.assertIn('prms_ic.out', go) test_case.assertIn('prms.out', go) test_case.assertIn('statvar.dat', go) class TestParameters(unittest.TestCase): def setUp(self): self.test_data_dir = os.path.join('test', 'data') self.test_param = os.path.join(self.test_data_dir, 'parameters') self.temp_dir = os.path.join('test', 'data', 'tmp') if os.path.isdir(self.temp_dir): shutil.rmtree(self.temp_dir) os.mkdir(self.temp_dir) def tearDown(self): if os.path.isdir(self.temp_dir): shutil.rmtree(self.temp_dir) def test_faithful_copy(self): """ Parameters class should load and write identical file """ test_copy = os.path.join(self.temp_dir, 'param_copy_test') p = Parameters(self.test_param) p.write(test_copy) expected = open(self.test_param) generated = open(test_copy) # ignore first two lines ignore now date written on Parameters.write expected = expected.readlines()[2:] generated = generated.readlines()[2:] assert expected == generated def test_modify_params(self): "parameter and data file modification access should work as expected" # test parameters mod with 1d rad_trncf params_out = os.path.join(self.temp_dir, 'modify_params_out') mod_d = {'rad_trncf': lambda x: 1.1*x} modify_params(self.test_param, params_out, mod_d) generated = open(params_out).readlines()[2:] expected = open( os.path.join( self.test_data_dir, 'expected_rad_trncf_1.1' ) ).readlines()[2:] assert expected == generated # test parameters mod with 2d snow_adj params_out = os.path.join(self.temp_dir, 'modify_params_out') mod_d = {'snow_adj': lambda x: 1.1*x} modify_params(self.test_param, params_out, mod_d) generated = open(params_out).readlines()[2:] expected = open( os.path.join( self.test_data_dir, 'expected_snow_adj_1.1' ) ).readlines()[2:] for a, b in zip(expected, generated): try: a = float(a) b = float(b) self.assertAlmostEqual(a, b, places=5) except ValueError: assert a == b def colored_string_diff(s1, s2): """ Writes differences between strings s1 and s2 """ d = Differ() diff = d.compare(s1.splitlines(), s2.splitlines()) diffList = [el for el in diff if el[0] != ' ' and el[0] != '?'] for l in diffList: if l[0] == '+': print(bcolors.GREEN + '+' + l[1:] + bcolors.ENDC) elif l[0] == '-': print(bcolors.RED + '-' + l[1:] + bcolors.ENDC) else: assert False, 'Error, diffList entry must start with + or -' class bcolors: HEADER = '\033[95m' BLUE = '\033[94m' GREEN = '\033[92m' YELLOW = '\033[93m' RED = '\033[91m' ENDC = '\033[0m' |
| You are visitor 01402503 — GeezerVison does not store the pages you look up. Best viewed with Netscape Navigator 4.7 or Internet Explorer 6 at 800×600. No cookies required. |