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GeezerVison is showing github.com — biojava/biojava-structure/pom.xml at biojava-7.2.6 · biojava/biojava Expand file tree/ Copy pathpom.xmlMore file actions 188 lines (174 loc) · 5.18 KB / Copy pathpom.xmlFile metadata and controls188 lines (174 loc) · 5.18 KB 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 <?xml version="1.0" encoding="UTF-8"?> <project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/maven-v4_0_0.xsd"> <modelVersion>4.0.0</modelVersion> <parent> <artifactId>biojava</artifactId> <groupId>org.biojava</groupId> <version>7.2.6</version> </parent> <artifactId>biojava-structure</artifactId> <name>biojava-structure</name> <description>The protein structure modules of BioJava.</description> <licenses> <license> <name>GNU LGPL v2</name> <url>http://www.gnu.org/licenses/old-licenses/lgpl-2.1.txt</url> <distribution>repo</distribution> </license> </licenses> <dependencies> <dependency> <groupId>org.rcsb</groupId> <artifactId>${ciftools.artifact}</artifactId> <version>${ciftools.version}</version> </dependency> <dependency> <groupId>org.rcsb</groupId> <artifactId>mmtf-api</artifactId> <version>${mmtf.version}</version> <scope>compile</scope> </dependency> <dependency> <groupId>org.rcsb</groupId> <artifactId>mmtf-serialization</artifactId> <version>${mmtf.version}</version> <scope>compile</scope> </dependency> <dependency> <groupId>org.rcsb</groupId> <artifactId>mmtf-codec</artifactId> <version>${mmtf.version}</version> <scope>compile</scope> <exclusions> <!-- This is needed because mmtf uses slf4j 1.7 and the log4j2 slf4j1 binding, somehow clashing with slf4j2 in this repo --> <exclusion> <groupId>org.apache.logging.log4j</groupId> <artifactId>log4j-slf4j-impl</artifactId> </exclusion> </exclusions> </dependency> <dependency> <groupId>org.biojava</groupId> <artifactId>biojava-alignment</artifactId> <version>7.2.6</version> <scope>compile</scope> </dependency> <dependency> <groupId>org.biojava</groupId> <artifactId>biojava-core</artifactId> <version>7.2.6</version> <scope>compile</scope> </dependency> <dependency> <groupId>java3d</groupId> <artifactId>vecmath</artifactId> <version>1.3.1</version> </dependency> <dependency> <groupId>org.jgrapht</groupId> <artifactId>jgrapht-core</artifactId> <!-- Pin! Java 8 requires 1.4.0 --> <version>1.4.0</version> </dependency> <dependency> <groupId>jakarta.xml.bind</groupId> <artifactId>jakarta.xml.bind-api</artifactId> </dependency> <dependency> <groupId>org.glassfish.jaxb</groupId> <artifactId>jaxb-runtime</artifactId> </dependency> <!-- Used for json deserialization in PDBStatus --> <dependency> <groupId>com.fasterxml.jackson.core</groupId> <artifactId>jackson-databind</artifactId> <version>2.13.4.2</version> </dependency> <!-- logging dependencies (managed by parent pom, don't set versions or scopes here) --> <dependency> <groupId>org.slf4j</groupId> <artifactId>slf4j-api</artifactId> </dependency> <!-- binding for log4j2, scope=runTime set in parent pom --> <dependency> <groupId>org.apache.logging.log4j</groupId> <artifactId>log4j-slf4j2-impl</artifactId> </dependency> <dependency> <groupId>org.apache.logging.log4j</groupId> <artifactId>log4j-api</artifactId> </dependency> <dependency> <groupId>org.apache.logging.log4j</groupId> <artifactId>log4j-core</artifactId> </dependency> <!-- Testing related dependencies --> <dependency> <groupId>junit</groupId> <artifactId>junit</artifactId> <scope>test</scope> </dependency> <dependency> <groupId>xmlunit</groupId> <artifactId>xmlunit</artifactId> <version>1.6</version> <scope>test</scope> </dependency> <!-- Junit5 dependencies, defined in parent pom. --> <dependency> <groupId>org.junit.jupiter</groupId> <artifactId>junit-jupiter-engine</artifactId> </dependency> <dependency> <groupId>org.junit.jupiter</groupId> <artifactId>junit-jupiter-params</artifactId> </dependency> <dependency> <groupId>org.junit.vintage</groupId> <artifactId>junit-vintage-engine</artifactId> </dependency> </dependencies> <properties> <maven.build.timestamp.format>yyyyMMdd-HHmm</maven.build.timestamp.format> <timestamp>${maven.build.timestamp}</timestamp> </properties> <build> <plugins> <!-- Excluding demo package is required for avoiding namespace clashes (demo package is in all modules) for signing the jar. See issue #387 --> <plugin> <groupId>org.apache.maven.plugins</groupId> <artifactId>maven-jar-plugin</artifactId> <configuration> <excludes> <exclude>demo/**</exclude> </excludes> </configuration> </plugin> <plugin> <groupId>org.apache.maven.plugins</groupId> <artifactId>maven-resources-plugin</artifactId> </plugin> </plugins> <resources> <resource> <directory>src/main/resources</directory> <filtering>true</filtering> <includes> <include>**/*.properties</include> </includes> </resource> <resource> <directory>src/main/resources</directory> <filtering>false</filtering> <includes> <include>**/*.cif.gz</include> <include>**/*.pdb.gz</include> <include>**/*.mat</include> <include>**/*.xml</include> </includes> </resource> </resources> </build> </project> |
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