GeezerVison is showing github.com — biojava/biojava-structure/src/main/java/demo/DemoCATH.java at master · biojava/biojava

Expand file tree

DemoCATH.java

Copy path

More file actions

Latest commit

History

64 lines (50 loc) · 1.5 KB

DemoCATH.java

Copy path

File metadata and controls

64 lines (50 loc) · 1.5 KB

Raw

Copy raw file

Download raw file

Open symbols panel

Edit and raw actions

* BioJava development code

* This code may be freely distributed and modified under the

* terms of the GNU Lesser General Public Licence. This should

* be distributed with the code. If you do not have a copy,

* see:

* http://www.gnu.org/copyleft/lesser.html

* Copyright for this code is held jointly by the individual

* authors. These should be listed in @author doc comments.

* For more information on the BioJava project and its aims,

* or to join the biojava-l mailing list, visit the home page

* at:

* http://www.biojava.org/

package demo;

import org.biojava.nbio.structure.Structure;

import org.biojava.nbio.structure.align.util.AtomCache;

import org.biojava.nbio.structure.cath.CathDatabase;

import org.biojava.nbio.structure.cath.CathDomain;

import org.biojava.nbio.structure.cath.CathInstallation;

/** An example for how to access CATH data.

* run with -Xmx512M

* @author Andreas Prlic

public class DemoCATH {

public static void main(String[] args){

AtomCache cache = new AtomCache();

CathDatabase database = new CathInstallation(cache.getPath());

String domainID = "1cdgA01";

CathDomain cathDomain = database.getDescriptionByCathId(domainID);

System.out.println(cathDomain);

Structure cathDomainStructure;

try {

cathDomainStructure = cache.getStructure(domainID);

System.out.println(cathDomainStructure);

} catch (Exception e) {

// TODO Auto-generated catch block

e.printStackTrace();

}