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biojava-core/src/test/java/org/biojava/nbio/core
- alignment/matrices
  - SubstitutionMatrixTest.java
- sequence/io
  - FastaGeneWriterTest.java
biojava-integrationtest/src/test/java/org/biojava/nbio/structure/test/align
- FlipAFPChainTest.java
- fatcat
  - FlipAFPChainTest.java
  - TestOutputStrings.java

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`‎biojava-core/src/test/java/org/biojava/nbio/core/alignment/matrices/SubstitutionMatrixTest.java‎`

Copy file name to clipboardExpand all lines: biojava-core/src/test/java/org/biojava/nbio/core/alignment/matrices/SubstitutionMatrixTest.java

+4-4Lines changed: 4 additions & 4 deletions

Original file line number	Diff line number	Diff line change
`@@ -54,8 +54,8 @@ void getMatrixReturnsCopy(){`
`54`	`54`	`void matrixToString(){`
`55`	`55`	`String asString = sm.toString();`
`56`	`56`	`// description + 5*2 for ATCGNatcgn + 1 header + 1 for '-'`
`57`		`- assertEquals(13, asString.split("\n").length);`
`58`		`- String header = asString.split("\r?\n")[1];`
	`57`	`+ assertEquals(13, asString.split("\\n").length);`
	`58`	`+ String header = asString.split("\\R")[1];`
`59`	`59`	`assertTrue(header.replaceAll(" ","").matches("[ATCGatcgNn-]+"));`
`60`	`60`	`}`
`61`	`61`
`@@ -64,8 +64,8 @@ void matrixAsString(){`
`64`	`64`	`String asString = sm.getMatrixAsString();`
`65`	`65`
`66`	`66`	`// 5*2 for ATCGNatcgn + 1 header + 1 for '-'`
`67`		`- assertEquals(12, asString.split("\n").length);`
`68`		`- String header = asString.split("\r?\n")[0];`
	`67`	`+ assertEquals(12, asString.split("\\n").length);`
	`68`	`+ String header = asString.split("\\R")[0];`
`69`	`69`	`assertTrue(header.replaceAll(" ","").matches("[ATCGatcgNn-]+"));`
`70`	`70`	`}`
`71`	`71`	`}`

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`‎biojava-core/src/test/java/org/biojava/nbio/core/sequence/io/FastaGeneWriterTest.java‎`

Copy file name to clipboardExpand all lines: biojava-core/src/test/java/org/biojava/nbio/core/sequence/io/FastaGeneWriterTest.java

+1-1Lines changed: 1 addition & 1 deletion

Original file line number	Diff line number	Diff line change
`@@ -58,7 +58,7 @@ void basicGeneWriterTest() throws Exception {`
`58`	`58`	`fastaWriter.process();`
`59`	`59`
`60`	`60`	`String output = new String(os.toByteArray(), "UTF-8");`
`61`		`- String [] lines = output.split("\r?\n");`
	`61`	`+ String [] lines = output.split("\\R");`
`62`	`62`	`assertEquals(4,lines.length);`
`63`	`63`	`assertEquals(">gene1", lines[0]);`
`64`	`64`	`assertEquals("ATATATATATaTATAtatat", lines[1]);`

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`‎biojava-integrationtest/src/test/java/org/biojava/nbio/structure/test/align/FlipAFPChainTest.java‎`

Copy file name to clipboardExpand all lines: biojava-integrationtest/src/test/java/org/biojava/nbio/structure/test/align/FlipAFPChainTest.java

+2-3Lines changed: 2 additions & 3 deletions

Original file line number	Diff line number	Diff line change
`@@ -185,10 +185,9 @@ public static void rotateAtoms2(AFPChain afpChain,Atom[] ca2){`
`185`	`185`	`}`
`186`	`186`
`187`	`187`
`188`		`- private static final String newline = System.getProperty("line.separator");`
`189`	`188`	`private void printFirstMismatch(String s1, String s2){`
`190`		`- String[] spl1 = s1.split(newline);`
`191`		`- String[] spl2 = s2.split(newline);`
	`189`	`+ String[] spl1 = s1.split("\\R");`
	`190`	`+ String[] spl2 = s2.split("\\R");`
`192`	`191`
`193`	`192`	`for (int i = 0 ; i < spl1.length ; i++){`
`194`	`193`

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`‎biojava-integrationtest/src/test/java/org/biojava/nbio/structure/test/align/fatcat/FlipAFPChainTest.java‎`

Copy file name to clipboardExpand all lines: biojava-integrationtest/src/test/java/org/biojava/nbio/structure/test/align/fatcat/FlipAFPChainTest.java

+2-3Lines changed: 2 additions & 3 deletions

Original file line number	Diff line number	Diff line change
`@@ -204,10 +204,9 @@ public static void rotateAtoms2(AFPChain afpChain,Atom[] ca2){`
`204`	`204`	`}`
`205`	`205`
`206`	`206`
`207`		`- static final String newline = System.getProperty("line.separator");`
`208`	`207`	`public void printFirstMismatch(String s1, String s2){`
`209`		`- String[] spl1 = s1.split(newline);`
`210`		`- String[] spl2 = s2.split(newline);`
	`208`	`+ String[] spl1 = s1.split("\\R");`
	`209`	`+ String[] spl2 = s2.split("\\R");`
`211`	`210`
`212`	`211`	`for (int i = 0 ; i < spl1.length ; i++){`
`213`	`212`

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`‎biojava-integrationtest/src/test/java/org/biojava/nbio/structure/test/align/fatcat/TestOutputStrings.java‎`

Copy file name to clipboardExpand all lines: biojava-integrationtest/src/test/java/org/biojava/nbio/structure/test/align/fatcat/TestOutputStrings.java

+2-2Lines changed: 2 additions & 2 deletions

Original file line number	Diff line number	Diff line change
`@@ -28,8 +28,8 @@ public class TestOutputStrings {`
`28`	`28`	`private static final String newline = System.getProperty("line.separator");`
`29`	`29`
`30`	`30`	`public void printFirstMismatch(String s1, String s2){`
`31`		`- String[] spl1 = s1.split(newline);`
`32`		`- String[] spl2 = s2.split(newline);`
	`31`	`+ String[] spl1 = s1.split("\\R");`
	`32`	`+ String[] spl2 = s2.split("\\R");`
`33`	`33`
`34`	`34`	`for (int i = 0 ; i < spl1.length ; i++){`
`35`	`35`

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