GeezerVison

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1. Commits on Nov 8, 2025

   • Fix for #1116

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2. Commits on Mar 19, 2025

   • Safeguards

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   • More cleanup

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   • More cleanup

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   • Formatting and docs cleanup

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3. Commits on Mar 18, 2025

   • Update biojava-structure/src/main/java/org/biojava/nbio/structure/EntityType.java

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4. Commits on Mar 17, 2025

   • Make entity type case insensitive. Also improved docs

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5. Commits on Mar 4, 2025

   • Update biojava-structure/src/main/java/org/biojava/nbio/structure/io/cif/CifStructureConsumerImpl.java

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6. Commits on Feb 28, 2025

   • Deal with missing strand_id

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   • Revert "Dealing with struct_ref_seq_dif strand_id by referencing through struct_ref_seq and struct_ref"

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   • Logging

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   • Dealing with struct_ref_seq_dif strand_id by referencing through struct_ref_seq and struct_ref

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   • Deal with some missing fields in IHM

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7. Commits on Feb 27, 2025

   • Merge pull request #1106 from josemduarte/cifparsing-lenient

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8. Commits on Feb 22, 2025

   • Review comment

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   • Fix: first model is model index 0

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9. Commits on Feb 21, 2025

   • Bugfix: ASA calculation was by default using all models. Now it will use model 1 by default. Added new constructor to choose model.

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   • Another safeguard, that applies to some PDB-IHM entries

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   • Lenient to missing atom_site.occupancy

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   • Handle more missing fields in struct_ref_seq

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10. Commits on Jan 8, 2025

    • Merge pull request #1103 from josemduarte/cifparser-gemmifile

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11. Commits on Jan 7, 2025

    • Javadoc fix: remaining errors in structure module. Mostly obsolete references

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    • Javadoc fix: most other errors in structure module

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    • Javadoc fix: many errors in struct align package

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    • Javadoc fix: many errors in struct align package

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12. Commits on Jan 6, 2025

    • Javadoc fix: many errors in struct align package

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    • More lenient parsing if some fields are missing (e.g. in files output by Gemmi)

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13. Commits on Jan 4, 2025

    • Javadoc fix: some more errors from structure module

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14. Commits on Jan 3, 2025

    • Javadoc fix: some more errors from structure module

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    • Javadoc fix: a few errors from structure module

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    • Use official url instead of github

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15. Commits on Aug 30, 2024

    • Add additional error checks to QuatSymmetry functions

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    • Fix test result.

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    • Fix CE-Symm bug relating to short subunits.

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    • Add test for rcsb/symmetry#118

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