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1. Commits on Sep 19, 2026

   • Merge pull request #1155 from josemduarte/jd/interf-clustering

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   • Sort by number of contacts for a more deterministic clustering result.

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   • Sort by number of contacts for a more deterministic clustering result.

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   • Guard against empty clusters

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2. Commits on Sep 17, 2026

   • Further fix: don't add empty groups or chains in parseCAOnly

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3. Commits on Sep 14, 2026

   • Bugfix: setParseCAOnly wasn't correctly filtering CA-only in CIF implementation

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   • Docs

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   • Use a greedy approach (leader algorithm) for a much more scalable interface clustering

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4. Commits on Sep 4, 2026

   • Merge pull request #1134 from aalhossary/aa/electron-density-maps

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   • Merge pull request #1147 from biojava/jd/contact-perf

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5. Commits on Sep 3, 2026

   • Docs

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6. Commits on Sep 1, 2026

   • Merge pull request #1150 from aalhossary/aa/ecod-lock-on-failure

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7. Commits on Aug 30, 2026

   • Address map coefficients by name, not by a constructed path

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   • Use a definition list rather than a table in UrlTemplates javadoc

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   • Test the density fetching, offline and against the live services

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   • Display density maps in the Jmol panel

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   • Add electron density and cryo-EM map fetching with a fallback chain

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   • Keep the ECOD read lock balanced when loading fails

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8. Commits on Aug 28, 2026

   • Merge branch 'master' into jd/asa-perf

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   • Presize the AtomContactSet HashMap. Performance gain is ~ 1.2x

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9. Commits on Aug 27, 2026

   • Logging for resolution parsing: warn only when they are actually different

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   • Logging cosmetics

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   • Merge pull request #1145 from biojava/jd/cath-fixes

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   • Use int arrays for performance. Gain is ~ 1.5x

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   • Avoiding sqrt when unnecessary. About 8% performance gain

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   • Demoting

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10. Commits on Aug 26, 2026

    • Logging

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    • Safeguard for case of nothing parseable in file

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    • Write the entry identifier as a data item, not only as the block name

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    • Merge branch 'master' into jd/cath-fixes

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    • Merge upstream master into aa/ecod-new-format

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    • Fix ArrayIndexOutOfBoundsException and file validation in CathInstallation

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    • Use parallel primitive arrays for neighbors in AsaCalculator

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11. Commits on Aug 24, 2026

    • Pure array solution for sphere points. About 10% faster

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12. Commits on Aug 17, 2026

    • Support the new ECOD distribution format

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