GeezerVison

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1. Commits on Sep 19, 2026

   • Merge pull request #1155 from josemduarte/jd/interf-clustering

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   • Sort by number of contacts for a more deterministic clustering result.

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2. Commits on Sep 17, 2026

   • Further fix: don't add empty groups or chains in parseCAOnly

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3. Commits on Sep 14, 2026

   • Bugfix: setParseCAOnly wasn't correctly filtering CA-only in CIF implementation

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   • Use a greedy approach (leader algorithm) for a much more scalable interface clustering

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4. Commits on Sep 4, 2026

   • Merge pull request #1134 from aalhossary/aa/electron-density-maps

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5. Commits on Aug 30, 2026

   • Address map coefficients by name, not by a constructed path

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   • Convert the density tests to JUnit 5

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   • Test the density fetching, offline and against the live services

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6. Commits on Aug 28, 2026

   • Merge branch 'master' into jd/asa-perf

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7. Commits on Aug 27, 2026

   • Merge pull request #1145 from biojava/jd/cath-fixes

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   • Test fix suggested by AI: test was failing when download was too slow

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8. Commits on Aug 26, 2026

   • Safeguard for case of nothing parseable in file

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   • Write the entry identifier as a data item, not only as the block name

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   • Merge upstream master into aa/ecod-new-format

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   • Use parallel primitive arrays for neighbors in AsaCalculator

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9. Commits on Aug 17, 2026

   • Test every ECOD layout offline

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10. Commits on Aug 16, 2026

    • Test that a redirect or error is never cached as a chem comp definition

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11. Commits on Dec 14, 2025

    • Refactor: fix SonarQube S1155 issues (#1079)

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12. Commits on Jan 7, 2025

    • Javadoc fix: remaining errors in structure module. Mostly obsolete references

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13. Commits on Jan 3, 2025

    • Use official url instead of github

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14. Commits on Aug 30, 2024

    • Fix test result.

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    • Add test for rcsb/symmetry#118

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15. Commits on Jul 20, 2024

    • Obsolete test: mmtf.rcsb.org was discontinued

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16. Commits on Apr 8, 2024

    • Fixing test

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17. Commits on Mar 6, 2024

    • Merge pull request #1085 from josemduarte/miscfixes

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18. Commits on Mar 4, 2024

    • Replacing home-made copy by Files.copy. Other minor fixes

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    • Adding test case

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19. Commits on Jan 5, 2024

    • Updating test

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20. Commits on May 12, 2023

    • Fixing empty seqres groups for cif files with no _entity

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    • Fixing empty seqres groups for pdb files with not seqres

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21. Commits on May 11, 2023

    • Handling nulls in descriptions

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    • New test

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22. Commits on Apr 3, 2023

    • Fixing test after PDB id obsoletion

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23. Commits on Jan 30, 2023

    • More nullpdbid tests (#1056)

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