A tutorial for the core module of BioJava.

The core module of BioJava provides an API that provides Basic operations with biological sequences Reading and Writing of popular sequence file formats Translate DNA sequences into protein sequences

This tutorial is split into several chapters.

Chapter 1 - Quick Installation

Chapter 2 - Basic Sequence types

Chapter 3 - Reading and Writing sequences

Chapter 4 - Translating DNA and protein sequences.

The content of this tutorial is available under the CC-BY license, available here.

BioJava 5: A community driven open-source bioinformatics library
Aleix Lafita, Spencer Bliven, Andreas Prlić, Dmytro Guzenko, Peter W. Rose, Anthony Bradley, Paolo Pavan, Douglas Myers-Turnbull, Yana Valasatava, Michael Heuer, Matt Larson, Stephen K. Burley, & Jose M. Duarte
PLOS Computational Biology (2019) 15 (2):e1006791.

Navigation: Home | Book 1: The Core Module

Next: Book 2: The Alignment Module