GeezerVison

Branch selector

Commit history

1. Commits on Dec 16, 2013

   • Refactored alignment to allow anchored compounds for all global alignments

     Show description for f0b6981
     d-cameron

     committed
     f0b6981View commit details

     Copy full SHA for f0b6981

     Browse repository at this point
2. Commits on Dec 11, 2013

   • Additional GuanUberbacher test coverage

     d-cameron

     committed
     ec9ff19View commit details

     Copy full SHA for ec9ff19

     Browse repository at this point

   • Bug fix: Cut query positions are no longer outside the bounds of the subproblem

     d-cameron

     committed
     9dfeb09View commit details

     Copy full SHA for 9dfeb09

     Browse repository at this point

   • Refactored subproblem bounds from int[4] into a Subproblem class to improve code readability

     d-cameron

     committed
     6c9da31View commit details

     Copy full SHA for 6c9da31

     Browse repository at this point

   • Alignments of zero length return a null Location instead of crashing during alignment

     d-cameron

     committed
     a306991View commit details

     Copy full SHA for a306991

     Browse repository at this point
3. Commits on Dec 10, 2013

   • Merge branch 'master' of https://github.com/d-cameron/biojava

     d-cameron

     committed
     14471c1View commit details

     Copy full SHA for 14471c1

     Browse repository at this point

   • Added multiple test cases for various alignment bugs including #78

     d-cameron

     committed
     fcd8531View commit details

     Copy full SHA for fcd8531

     Browse repository at this point

   • Added multiple test cases for various alignment bugs including #81

     d-cameron

     committed
     da71effView commit details

     Copy full SHA for da71eff

     Browse repository at this point

   • Compounds not included in the scoring matrix will default to the alternative case of the compound if it exists in the scoring matrix instead of the min matrix value

     d-cameron

     committed
     6f91a9fView commit details

     Copy full SHA for 6f91a9f

     Browse repository at this point
4. Commits on Dec 2, 2013

   • small cleanup

     

     Andreas Prlic

     committed
     3780cb4View commit details

     Copy full SHA for 3780cb4

     Browse repository at this point
5. Commits on Nov 29, 2013

   • cleanup

     andreasprlic

     committed
     dfd817bView commit details

     Copy full SHA for dfd817b

     Browse repository at this point

   • removing external dependency on log4j

     andreasprlic

     committed
     879949eView commit details

     Copy full SHA for 879949e

     Browse repository at this point
6. Commits on Nov 28, 2013

   • Merge pull request #80 from emckee2006/master

     Show description for 5654954
     andreasprlic

     committed
     5654954View commit details

     Copy full SHA for 5654954

     Browse repository at this point
7. Commits on Nov 27, 2013

   • Merge pull request #8 from biojava/master

     Show description for e9d97c2
     emckee2006

     committed
     e9d97c2View commit details

     Copy full SHA for e9d97c2

     Browse repository at this point

   • Update method comment to indicate legal calling sequences for using

     Show description for 02d762d
     emckee2006

     committed
     02d762dView commit details

     Copy full SHA for 02d762d

     Browse repository at this point

   • Add a test case based on Daniel Cameron's example of failing FeatureList

     Show description for 2bd7c20
     emckee2006

     committed
     2bd7c20View commit details

     Copy full SHA for 2bd7c20

     Browse repository at this point

   • Merge pull request #79 from pwrose/master

     Show description for 25a927b
     andreasprlic

     committed
     25a927bView commit details

     Copy full SHA for 25a927b

     Browse repository at this point

   • Merge pull request #7 from biojava/master

     Show description for 83b8ca2
     emckee2006

     committed
     83b8ca2View commit details

     Copy full SHA for 83b8ca2

     Browse repository at this point
8. Commits on Nov 23, 2013

   • Removing ScopDatabase from AtomCache

     Show description for 2e1807f
     sbliven

     committed
     2e1807fView commit details

     Copy full SHA for 2e1807f

     Browse repository at this point

   • RotationAxis: better handling of translational movements

     sbliven

     committed
     1706d4cView commit details

     Copy full SHA for 1706d4c

     Browse repository at this point

   • Cleanup and minor bug fixes

     sbliven

     committed
     ca13f6aView commit details

     Copy full SHA for ca13f6a

     Browse repository at this point
9. Commits on Nov 22, 2013

   • Initialize list of bonds lazily. The bond list in an Atom is now

     Show description for 0001464
     pwrose

     committed
     0001464View commit details

     Copy full SHA for 0001464

     Browse repository at this point

   • Checking for empty SCOP files

     Show description for 8922419
     sbliven

     committed
     8922419View commit details

     Copy full SHA for 8922419

     Browse repository at this point
10. Commits on Nov 21, 2013

    • Merge pull request #73 from andreasprlic/master

      Show description for 839d1f1
      andreasprlic

      committed
      839d1f1View commit details

      Copy full SHA for 839d1f1

      Browse repository at this point

    • some cleanup

      andreasprlic

      committed
      c82029dView commit details

      Copy full SHA for c82029d

      Browse repository at this point
11. Commits on Nov 20, 2013

    • Merge pull request #6 from biojava/master

      Show description for e746d7d
      emckee2006

      committed
      e746d7dView commit details

      Copy full SHA for e746d7d

      Browse repository at this point

    • updating example to latest API

      andreasprlic

      committed
      fc53b3fView commit details

      Copy full SHA for fc53b3f

      Browse repository at this point
12. Commits on Nov 19, 2013

    • Fix ScopFactory bug

      Show description for ed15de1
      sbliven

      committed
      ed15de1View commit details

      Copy full SHA for ed15de1

      Browse repository at this point

    • Fix a NullPointer in createAFPChain

      Show description for 6f6f31a
      sbliven

      committed
      6f6f31aView commit details

      Copy full SHA for 6f6f31a

      Browse repository at this point
13. Commits on Nov 15, 2013

    • Merge pull request #5 from biojava/master

      Show description for 890b718
      emckee2006

      committed
      890b718View commit details

      Copy full SHA for 890b718

      Browse repository at this point
14. Commits on Nov 13, 2013

    • Check in of Cox Regression code for survival analysis ported from the R survival package

      

      Scooter

      authored and

      Scooter

      committed
      d137cfbView commit details

      Copy full SHA for d137cfb

      Browse repository at this point

    • Test Committ

      

      Scooter

      authored and

      Scooter

      committed
      ee9aa94View commit details

      Copy full SHA for ee9aa94

      Browse repository at this point
15. Commits on Nov 11, 2013

    • Merge pull request #4 from biojava/master

      Show description for 3ca3a9b
      emckee2006

      committed
      3ca3a9bView commit details

      Copy full SHA for 3ca3a9b

      Browse repository at this point
16. Commits on Nov 7, 2013

    • renaming submodule

      

      Andreas Prlic

      committed
      d03066eView commit details

      Copy full SHA for d03066e

      Browse repository at this point

    • adding new survival module

      

      Andreas Prlic

      committed
      93b2e79View commit details

      Copy full SHA for 93b2e79

      Browse repository at this point