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GeezerVison is showing github.com — fix: stop stalled remote commands when their timeout expires (#2276) · gitpython-developers/GitPython@56d0713

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  • git
    • cmd.py
    • remote.py
  • test
    • test_autointerrupt.py
    • test_git.py
    • test_remote.py
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‎git/cmd.py‎

Copy file name to clipboardExpand all lines: git/cmd.py
+85-75Lines changed: 85 additions & 75 deletions
Original file line numberDiff line numberDiff line change
@@ -19,6 +19,7 @@
1919
import sys
2020
from textwrap import dedent
2121
import threading
22+
import time
2223
import warnings
2324

2425
from git.compat import defenc, force_bytes, safe_decode
@@ -99,6 +100,42 @@
99100
## @{
100101

101102

103+
def _kill_process(pid: int) -> bool:
104+
"""Kill a POSIX process and its descendants, returning whether it was killed."""
105+
# Collect descendants before signalling, while their parent PIDs still identify them.
106+
pids = [pid]
107+
for parent_pid in pids:
108+
try:
109+
try:
110+
p = Popen(["pgrep", "-P", str(parent_pid)], stdout=PIPE)
111+
except FileNotFoundError:
112+
# POSIX ps does not support selecting by parent PID.
113+
with Popen(["ps", "-A", "-o", "pid=", "-o", "ppid="], stdout=PIPE) as p:
114+
if p.stdout is not None:
115+
for line in p.stdout:
116+
fields = line.split()
117+
if len(fields) == 2 and all(field.isdigit() for field in fields):
118+
if int(fields[1]) == parent_pid:
119+
pids.append(int(fields[0]))
120+
else:
121+
with p:
122+
if p.stdout is not None:
123+
for line in p.stdout:
124+
if line.strip().isdigit():
125+
pids.append(int(line))
126+
except OSError as ex:
127+
_logger.info("Unable to enumerate child processes: %r", ex)
128+
killed = False
129+
if sys.platform != "win32":
130+
for process_pid in pids:
131+
try:
132+
os.kill(process_pid, signal.SIGKILL)
133+
killed = killed or process_pid == pid
134+
except OSError:
135+
pass
136+
return killed
137+
138+
102139
def handle_process_output(
103140
process: Union["Git.AutoInterrupt", Popen],
104141
stdout_handler: Union[
@@ -165,7 +202,7 @@ def pump_stream(
165202

166203
except Exception as ex:
167204
_logger.error(f"Pumping {name!r} of cmd({remove_password_if_present(cmdline)}) failed due to: {ex!r}")
168-
if "I/O operation on closed file" not in str(ex):
205+
if not (isinstance(ex, ValueError) and stream.closed):
169206
# Only reraise if the error was not due to the stream closing.
170207
raise CommandError([f"<{name}-pump>"] + remove_password_if_present(cmdline), ex) from ex
171208
finally:
@@ -200,27 +237,23 @@ def pump_stream(
200237
threads.append(t)
201238

202239
# FIXME: Why join? Will block if stdin needs feeding...
240+
deadline = None if kill_after_timeout is None else time.monotonic() + kill_after_timeout
203241
for t in threads:
204-
t.join(timeout=kill_after_timeout)
242+
t.join(timeout=None if deadline is None else max(0, deadline - time.monotonic()))
205243
if t.is_alive():
206244
if isinstance(process, Git.AutoInterrupt):
245+
if sys.platform != "win32" and process.proc is not None:
246+
_kill_process(process.proc.pid)
207247
process._terminate()
208248
else: # Don't want to deal with the other case.
209249
raise RuntimeError(
210250
"Thread join() timed out in cmd.handle_process_output()."
211251
f" kill_after_timeout={kill_after_timeout} seconds"
212252
)
213-
if stderr_handler:
214-
error_str: Union[str, bytes] = (
215-
f"error: process killed because it timed out. kill_after_timeout={kill_after_timeout} seconds"
216-
)
217-
if not decode_streams and isinstance(p_stderr, BinaryIO):
218-
# Assume stderr_handler needs binary input.
219-
error_str = cast(str, error_str)
220-
error_str = error_str.encode()
221-
# We ignore typing on the next line because mypy does not like the way
222-
# we inferred that stderr takes str or bytes.
223-
stderr_handler(error_str) # type: ignore[arg-type]
253+
process._timeout_error = (
254+
f"error: process killed because it timed out. kill_after_timeout={kill_after_timeout} seconds"
255+
)
256+
break
224257

225258
if finalizer:
226259
finalizer(process)
@@ -326,7 +359,7 @@ class _AutoInterrupt:
326359
raise.
327360
"""
328361

329-
__slots__ = ("proc", "args", "status")
362+
__slots__ = ("proc", "args", "status", "_timeout_error")
330363

331364
# If this is non-zero it will override any status code during _terminate, used
332365
# to prevent race conditions in testing.
@@ -336,6 +369,7 @@ def __init__(self, proc: Union[None, subprocess.Popen], args: Any) -> None:
336369
self.proc = proc
337370
self.args = args
338371
self.status: Union[int, None] = None
372+
self._timeout_error: Optional[str] = None
339373

340374
def _terminate(self) -> None:
341375
"""Terminate the underlying process."""
@@ -344,37 +378,45 @@ def _terminate(self) -> None:
344378

345379
proc = self.proc
346380
self.proc = None
347-
if proc.stdin:
348-
proc.stdin.close()
349-
if proc.stdout:
350-
proc.stdout.close()
351-
if proc.stderr:
352-
proc.stderr.close()
353-
# Did the process finish already so we have a return code?
354381
try:
355-
if proc.poll() is not None:
356-
self.status = self._status_code_if_terminate or proc.poll()
382+
if proc.stdin:
383+
# A timed-out process may already have exited before input is flushed.
384+
with contextlib.suppress(BrokenPipeError):
385+
proc.stdin.close()
386+
# Did the process finish already so we have a return code?
387+
try:
388+
if proc.poll() is not None:
389+
self.status = self._status_code_if_terminate or proc.poll()
390+
return
391+
except OSError as ex:
392+
_logger.info("Ignored error after process had died: %r", ex)
393+
394+
# It can be that nothing really exists anymore...
395+
if os is None or getattr(os, "kill", None) is None:
357396
return
358-
except OSError as ex:
359-
_logger.info("Ignored error after process had died: %r", ex)
360397

361-
# It can be that nothing really exists anymore...
362-
if os is None or getattr(os, "kill", None) is None:
363-
return
398+
# Try to kill it.
399+
try:
400+
proc.terminate()
401+
except (OSError, AttributeError) as ex:
402+
# On interpreter shutdown (notably on Windows), parts of the stdlib used by
403+
# subprocess can already be torn down (e.g. `subprocess._winapi` becomes None),
404+
# which can cause AttributeError during terminate(). In that case, we prefer
405+
# to silently ignore to avoid noisy "Exception ignored in: __del__" messages.
406+
_logger.info("Ignored error while terminating process: %r", ex)
407+
return
408+
# END exception handling
409+
finally:
410+
if proc.stdout:
411+
proc.stdout.close()
412+
if proc.stderr:
413+
proc.stderr.close()
364414

365-
# Try to kill it.
366415
try:
367-
proc.terminate()
368-
status = proc.wait() # Ensure the process goes away.
369-
416+
status = proc.wait()
370417
self.status = self._status_code_if_terminate or status
371418
except (OSError, AttributeError) as ex:
372-
# On interpreter shutdown (notably on Windows), parts of the stdlib used by
373-
# subprocess can already be torn down (e.g. `subprocess._winapi` becomes None),
374-
# which can cause AttributeError during terminate(). In that case, we prefer
375-
# to silently ignore to avoid noisy "Exception ignored in: __del__" messages.
376-
_logger.info("Ignored error while terminating process: %r", ex)
377-
# END exception handling
419+
_logger.info("Ignored error while waiting for terminated process: %r", ex)
378420

379421
def __del__(self) -> None:
380422
self._terminate()
@@ -395,6 +437,8 @@ def wait(self, stderr: Union[None, str, bytes] = b"") -> int:
395437
:raise git.exc.GitCommandError:
396438
If the return status is not 0.
397439
"""
440+
if self._timeout_error is not None:
441+
stderr = self._timeout_error
398442
stderr_b = force_bytes(data=stderr, encoding="utf-8") or b""
399443
status: Union[int, None]
400444
if self.proc is not None:
@@ -1382,8 +1426,8 @@ def execute(
13821426
2. Enumerating child processes requires ``pgrep -P``, or a ``ps`` command
13831427
supporting the POSIX ``-A`` and ``-o`` options if ``pgrep`` is not
13841428
installed. Effectiveness may vary on systems without these commands.
1385-
3. Deeper descendants do not receive signals, though they may sometimes
1386-
terminate as a consequence of their parent processes being killed.
1429+
3. Descendants are enumerated before signalling. Processes that detach
1430+
or spawn after enumeration may not receive signals.
13871431
4. `kill_after_timeout` uses ``SIGKILL``, which can have negative side
13881432
effects on a repository. For example, stale locks in case of
13891433
:manpage:`git-gc(1)` could render the repository incapable of accepting
@@ -1537,43 +1581,9 @@ def execute(
15371581
timeout = kill_after_timeout
15381582

15391583
def kill_process(pid: int) -> None:
1540-
"""Callback to kill a process.
1541-
1542-
This callback implementation would be ineffective and unsafe on Windows.
1543-
"""
1544-
child_pids = []
1545-
try:
1546-
p = Popen(["pgrep", "-P", str(pid)], stdout=PIPE)
1547-
except FileNotFoundError:
1548-
# POSIX ps does not support selecting by parent PID.
1549-
with Popen(["ps", "-A", "-o", "pid=", "-o", "ppid="], stdout=PIPE) as p:
1550-
if p.stdout is not None:
1551-
for line in p.stdout:
1552-
fields = line.split()
1553-
if len(fields) == 2 and all(field.isdigit() for field in fields):
1554-
if int(fields[1]) == pid:
1555-
child_pids.append(int(fields[0]))
1556-
else:
1557-
with p:
1558-
if p.stdout is not None:
1559-
for line in p.stdout:
1560-
if line.strip().isdigit():
1561-
child_pids.append(int(line))
1562-
try:
1563-
os.kill(pid, signal.SIGKILL)
1564-
for child_pid in child_pids:
1565-
try:
1566-
os.kill(child_pid, signal.SIGKILL)
1567-
except OSError:
1568-
pass
1569-
# Tell the main routine that the process was killed.
1584+
if _kill_process(pid):
15701585
assert kill_check is not None
15711586
kill_check.set()
1572-
except OSError:
1573-
# It is possible that the process gets completed in the duration
1574-
# after timeout happens and before we try to kill the process.
1575-
pass
1576-
return
15771587

15781588
def make_timeout_error() -> Union[str, bytes]:
15791589
err = f'Timeout: the command "{" ".join(redacted_command)}" did not complete in {timeout:g} secs.'
Collapse file

‎git/remote.py‎

Copy file name to clipboardExpand all lines: git/remote.py
+1-1Lines changed: 1 addition & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -988,7 +988,7 @@ def stdout_handler(line: str) -> None:
988988
# even if there is an output).
989989
if not output:
990990
raise
991-
elif stderr_text:
991+
elif stderr_text or proc._timeout_error:
992992
_logger.warning("Error lines received while fetching: %s", stderr_text)
993993
output.error = e
994994

Collapse file

‎test/test_autointerrupt.py‎

Copy file name to clipboardExpand all lines: test/test_autointerrupt.py
+39Lines changed: 39 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -1,3 +1,9 @@
1+
from subprocess import PIPE
2+
import sys
3+
import threading
4+
5+
import pytest
6+
17
from git.cmd import Git
28

39

@@ -31,3 +37,36 @@ def test_autointerrupt_terminate_ignores_attributeerror():
3137

3238
# Ensure the reference is cleared to avoid repeated attempts.
3339
assert ai.proc is None
40+
41+
42+
def test_autointerrupt_terminate_closes_buffered_stdin():
43+
ai = Git().hash_object("--stdin", as_process=True, istream=PIPE)
44+
proc = ai.proc
45+
proc.stdin.write(b"buffered input")
46+
try:
47+
ai._terminate()
48+
assert proc.stdin.closed
49+
assert proc.stdout.closed
50+
assert proc.stderr.closed
51+
finally:
52+
proc.stdout.close()
53+
proc.stderr.close()
54+
55+
56+
@pytest.mark.skipif(sys.platform == "win32", reason="requires POSIX SIGTERM handling")
57+
def test_autointerrupt_terminate_closes_pipes_before_waiting():
58+
script = (
59+
"import signal, sys; signal.signal(signal.SIGTERM, signal.SIG_IGN); "
60+
"print('ready', flush=True); sys.stdin.read(); sys.stdout.buffer.write(b'x' * 1000000)"
61+
)
62+
ai = Git().execute([sys.executable, "-c", script], as_process=True, istream=PIPE)
63+
proc = ai.proc
64+
assert proc.stdout.readline() == b"ready\n"
65+
watchdog = threading.Timer(5, proc.kill)
66+
watchdog.start()
67+
try:
68+
ai._terminate()
69+
assert proc.returncode != -9, "cleanup waited for exit with undrained output pipes"
70+
finally:
71+
watchdog.cancel()
72+
watchdog.join()

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