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GeezerVison is showing github.com — algorithm/string/suffix_tree.cc at master · john0xff/algorithm Expand file tree/ Copy pathsuffix_tree.ccMore file actions 137 lines (124 loc) · 3.14 KB / Copy pathsuffix_tree.ccFile metadata and controls137 lines (124 loc) · 3.14 KB 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 // // Suffix Tree (Ukkonen's algorithm) // // Description: // A suffix tree of a given string s is a // patricia (i.e., compressed trie) of all suffixes of s. // // Algorithm: // Ukkonen's left-to-right scan algorithm. // See the original paper. // // Complexity: // O(n). // Due to a large constant factor, it is useful in // n <= 10000 in programming contest. // Use suffix array, instead of suffix tree. // // References: // E. Ukkonen (1995): // On-line Construction of Suffix Trees. // Algorithmica, vol.14, no.3, pp.249--260. #include <iostream> #include <vector> #include <cstdio> #include <cstring> #include <algorithm> #include <functional> using namespace std; #define fst first #define snd second #define all(c) ((c).begin()), ((c).end()) struct suffix_tree { const char *str; const int n; int root; struct edge { int to, a, b; }; vector<vector<edge>> adj; vector<int> suf; int add_node() { adj.push_back(vector<edge>(0x100, {-1})); suf.push_back(0); return suf.size()-1; } int add_edge(int r, const edge &e) { adj[r][str[e.a]] = e; } int test_and_split(int s, int k, int p, char c) { if (k > p) return adj[s][c].to == -1 ? s : 0; edge e = adj[s][str[k]]; if (c == str[e.a + p - k + 1]) return 0; int r = add_node(); add_edge(r, {e.to, e.a + p - k + 1, e.b}); add_edge(s, {r, e.a, e.a + p - k}); return r; } int canonize(int s, int &k, int p) { if (p < k) return s; if (s == 0) { s = root; ++k; if (p < k) return s; } edge e = adj[s][str[k]]; while (e.b - e.a <= p - k) { k = k + e.b - e.a + 1; s = e.to; if (k <= p) e = adj[s][str[k]]; } return s; } int update(int s, int &k, int i) { int oldr = root, r = test_and_split(s, k, i-1, str[i]); while (r) { int rp = add_node(); add_edge(r, {rp, i, n-1}); if (oldr != root) suf[oldr] = r; oldr = r; s = canonize(suf[s], k, i-1); r = test_and_split(s, k, i-1, str[i]); } if (oldr != root) suf[oldr] = s; return s; } suffix_tree(const char *str) : str(str), n(strlen(str)) { add_node(); // bottom = 0 root = add_node(); int s = root, k = 0; for (int i = 0; i < n; ++i) { s = update(s, k, i); s = canonize(s, k, i); } } void display(int s, int tab = 0) { if (s == -1 || s == 0) return; for (int c = 0; c < 0x100; ++c) { if (adj[s][c].to != -1) { cout << string(tab, ' '); for (int i = adj[s][c].a; i <= adj[s][c].b; ++i) cout << str[i]; cout << endl; display(adj[s][c].to, tab+2); } } } void display() { display(root); } }; // === tick a time === #include <ctime> double tick() { static clock_t oldtick; clock_t newtick = clock(); double diff = 1.0*(newtick - oldtick) / CLOCKS_PER_SEC; oldtick = newtick; return diff; } int main() { //suffix_tree T("abracadabra"); //suffix_tree T("abracadabra"); //suffix_tree T("AAAAABCDEAAAAA#"); const int n = 10000; char s[n+1]; for (int i = 0; i < n; ++i) s[i] = "abc"[rand() % 3]; tick(); suffix_tree T(s); cout << "construction: " << tick() << endl; //T.display(); } |
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