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Issues on scientific linux 6.6 #521

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Issues on scientific linux 6.6#521

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Description

Globegitter

opened

on Mar 30, 2015

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It seems when trying to require nodegit on scientific linux it does not work. I am getting the following error:

module.js:318
    throw err;
          ^
Error: Cannot find module '../build/Debug/nodegit'
    at Function.Module._resolveFilename (module.js:316:15)
    at Function.Module._load (module.js:258:25)
    at Module.require (module.js:345:17)
    at require (module.js:364:17)
    at Object.<anonymous> (/code/node_modules/nodegit/lib/nodegit.js:12:12)
    at Module._compile (module.js:410:26)
    at Module._extensions..js (module.js:428:10)
    at Object.require.extensions.(anonymous function) [as .js] (/code/node_modules/babel/lib/babel/api/register/node.js:130:7)
    at Module.load (module.js:335:32)
    at Function.Module._load (module.js:290:12)

Looking more into it now.

When I try to build I get the following error:

{ [Error: Command failed: /bin/sh -c /code/nodegit/node_modules/.bin/pangyp rebuild
make: Warning: File `vendor/zlib.target.mk' has modification time 1.7 s in the future
../vendor/libssh2/src/openssl.c: In function '_libssh2_pub_priv_keyfile':
../vendor/libssh2/src/openssl.c:767: warning: value computed is not used
../vendor/libssh2/src/kex.c: In function '_libssh2_kex_exchange':
../vendor/libssh2/src/kex.c:1220: warning: dereferencing pointer 'methodlist' does break strict-aliasing rules
../vendor/libssh2/src/kex.c:1326: note: initialized from here
../vendor/libssh2/src/transport.c: In function '_libssh2_transport_send':
../vendor/libssh2/src/transport.c:716: warning: suggest braces around empty body in an 'if' statement
../vendor/openssl/openssl/crypto/x509v3/v3_utl.c: In function 'hex_to_string':
../vendor/openssl/openssl/crypto/x509v3/v3_utl.c:368: warning: 'static' is not at beginning of declaration
../vendor/openssl/openssl/crypto/cast/c_enc.c: In function 'CAST_encrypt':
../vendor/openssl/openssl/crypto/cast/c_enc.c:65: warning: 'register' is not at beginning of declaration
../vendor/openssl/openssl/crypto/cast/c_enc.c: In function 'CAST_decrypt':
../vendor/openssl/openssl/crypto/cast/c_enc.c:98: warning: 'register' is not at beginning of declaration
cc1plus: error: unrecognized command line option "-s
make: *** [Release/obj.target/nodegit/src/nodegit.o] Error 1
gyp ERR! build error
gyp ERR! stack Error: `make` failed with exit code: 2
gyp ERR! stack     at ChildProcess.onExit (/code/nodegit/node_modules/pangyp/lib/build.js:271:23)
gyp ERR! stack     at emitTwo (events.js:87:13)
gyp ERR! stack     at ChildProcess.emit (events.js:169:7)
gyp ERR! stack     at Process.ChildProcess._handle.onexit (child_process.js:1044:12)
gyp ERR! System Linux 3.18.5-tinycore64
gyp ERR! command "/home/install-node-iojs/releases/iojs/linux-x64/1.6.2/bin/iojs" "/code/nodegit/node_modules/.bin/pangyp" "rebuild"
gyp ERR! cwd /code/nodegit
gyp ERR! node -v v1.6.2
gyp ERR! pangyp -v v2.1.0
gyp ERR! not ok
]
  killed: false,
  code: 1,
  signal: null,
  cmd: '/bin/sh -c /code/nodegit/node_modules/.bin/pangyp rebuild' }

Activity

Globegitter
changed the title ~~[-]Issues on scientific linux[/-]~~ [+]Issues on scientific linux 6.6[/+] on Mar 30, 2015
maxkorp commented on Mar 30, 2015
maxkorp
on Mar 30, 2015
Collaborator
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Which versions of gcc and make do you have installed? We do require g++ 4.7 or newer, IIRC. Building nodegit requires -std=c++11, and between the errors your seeing in compilation and the note cc1plus: error: unrecognized command line option "-s, a lack of support for C++11 seems likely (eg with g++4.6 or older)

The default install most likely either incorrectly detected your platform/arch as compatible or (more likely) tried building on its own already, and failed on its own and slipped under the radar.
tgriffo commented on Apr 17, 2015
tgriffo
on Apr 17, 2015
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Hi guys, also having this issue on an Amazon Linux box..

g++ (GCC) 4.8.2 20140120 (Red Hat 4.8.2-16)

Any other dependencies I should check if I got the right version?
myhau commented on Apr 19, 2015
myhau
on Apr 19, 2015
More actions
Same issue here ( with require('nodegit') ) it's probably connected to #137 and #518 :
Error: Cannot find module '../build/Debug/nodegit'
My specs:
uname -a Linux ubiquitous 3.16.0-36-generic #48-Ubuntu SMP Tue Apr 14 20:07:19 UTC 2015 i686 i686 i686 GNU/Linux
g++ (Ubuntu 4.9.1-16ubuntu6) 4.9.1
Ubuntu 14.10 ( xubuntu )
node --version v0.12.2
npm --version 2.7.4
Also it doesn't automatically install fs-extra and npm as dependencies on my system.
I mean, I need to do npm install -g npm fs-extra before npm install -g nodegit
If I can provide some additional info, please let me know :)
tbranyen commented on Apr 19, 2015
tbranyen
on Apr 19, 2015
Member
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@myhau why do you think you need to install npm first? You already have NPM, when you use -g it's installing it into the exact same place that your command npm is.

myhau commented on Apr 19, 2015

myhau

on Apr 19, 2015

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When I type only npm install -g nodegit, here is what it says now:

λ npm install -g nodegit

> [email protected] prepublish /home/mihau/nodegit
> node lifecycleScripts/prepareForBuild.js

[email protected] /home/mihau/.npm-packages/lib/node_modules/nodegit
├── [email protected]
├── [email protected] ([email protected])
├── [email protected] ([email protected])
├── [email protected] ([email protected], [email protected], [email protected])
├── [email protected]
└── [email protected]

npm WARN installMany node-pre-gyp was bundled with [email protected], but bundled package wasn't found in unpacked tree
/
> [email protected] install /home/mihau/.npm-packages/lib/node_modules/nodegit
> node lifecycleScripts/install

[nodegit] Fetching binary from S3.
[nodegit] Failed to install prebuilt binary, building manually.
[nodegit] Making sure dependencies are available and native code is generated
[nodegit] Everything is ready to go, attempting compilation
[nodegit] Building native node module.
{ [Error: Command failed: /bin/sh -c npm install --ignore-scripts
npm ERR! Linux 3.16.0-36-generic
npm ERR! argv "node" "/home/mihau/.npm-packages/lib/node_modules/nodegit/node_modules/.bin/npm" "install" "--ignore-scripts"
npm ERR! node v0.12.2
npm ERR! npm  v2.8.3
npm ERR! code MODULE_NOT_FOUND

npm ERR! Cannot find module './_stream_duplex'
npm ERR! 
npm ERR! If you need help, you may report this error at:
npm ERR!     <https://github.com/npm/npm/issues>
npm ERR! Linux 3.16.0-36-generic
npm ERR! argv "node" "/home/mihau/.npm-packages/lib/node_modules/nodegit/node_modules/.bin/npm" "install" "--ignore-scripts"
npm ERR! node v0.12.2
npm ERR! npm  v2.8.3

npm ERR! Uncaught, unspecified "error" event.
npm ERR! 
npm ERR! If you need help, you may report this error at:
npm ERR!     <https://github.com/npm/npm/issues>
npm ERR! Linux 3.16.0-36-generic
npm ERR! argv "node" "/home/mihau/.npm-packages/lib/node_modules/nodegit/node_modules/.bin/npm" "install" "--ignore-scripts"
npm ERR! node v0.12.2
npm ERR! npm  v2.8.3
npm ERR! code MODULE_NOT_FOUND

npm ERR! Cannot find module './_stream_duplex'
npm ERR! 
npm ERR! If you need help, you may report this error at:
npm ERR!     <https://github.com/npm/npm/issues>
npm ERR! Linux 3.16.0-36-generic
npm ERR! argv "node" "/home/mihau/.npm-packages/lib/node_modules/nodegit/node_modules/.bin/npm" "install" "--ignore-scripts"
npm ERR! node v0.12.2
npm ERR! npm  v2.8.3
npm ERR! code MODULE_NOT_FOUND

npm ERR! Cannot find module './_stream_duplex'
npm ERR! 
npm ERR! If you need help, you may report this error at:
npm ERR!     <https://github.com/npm/npm/issues>
npm ERR! Linux 3.16.0-36-generic
npm ERR! argv "node" "/home/mihau/.npm-packages/lib/node_modules/nodegit/node_modules/.bin/npm" "install" "--ignore-scripts"
npm ERR! node v0.12.2
npm ERR! npm  v2.8.3
npm ERR! code MODULE_NOT_FOUND

npm ERR! Cannot find module './_stream_duplex'
npm ERR! 
npm ERR! If you need help, you may report this error at:
npm ERR!     <https://github.com/npm/npm/issues>
npm ERR! Linux 3.16.0-36-generic
npm ERR! argv "node" "/home/mihau/.npm-packages/lib/node_modules/nodegit/node_modules/.bin/npm" "install" "--ignore-scripts"
npm ERR! node v0.12.2
npm ERR! npm  v2.8.3
npm ERR! code MODULE_NOT_FOUND

npm ERR! Cannot find module './_stream_duplex'
npm ERR! 
npm ERR! If you need help, you may report this error at:
npm ERR!     <https://github.com/npm/npm/issues>

npm ERR! Please include the following file with any support request:
npm ERR!     /home/mihau/.npm-packages/lib/node_modules/nodegit/npm-debug.log
]
  killed: false,
  code: 1,
  signal: null,
  cmd: '/bin/sh -c npm install --ignore-scripts' }
undefined

> [email protected] postinstall /home/mihau/.npm-packages/lib/node_modules/nodegit
> node lifecycleScripts/clean

/home/mihau/.npm-packages/lib/node_modules/nodegit/lifecycleScripts/clean.js:13
npm.load({
    ^
TypeError: undefined is not a function
    at Object.<anonymous> (/home/mihau/.npm-packages/lib/node_modules/nodegit/lifecycleScripts/clean.js:13:5)
    at Module._compile (module.js:460:26)
    at Object.Module._extensions..js (module.js:478:10)
    at Module.load (module.js:355:32)
    at Function.Module._load (module.js:310:12)
    at Function.Module.runMain (module.js:501:10)
    at startup (node.js:129:16)
    at node.js:814:3
npm ERR! Linux 3.16.0-36-generic
npm ERR! argv "/usr/local/bin/node" "/usr/local/bin/npm" "install" "-g" "nodegit"
npm ERR! node v0.12.2
npm ERR! npm  v2.7.4
npm ERR! code ELIFECYCLE

npm ERR! [email protected] postinstall: `node lifecycleScripts/clean`
npm ERR! Exit status 1
npm ERR! 
npm ERR! Failed at the [email protected] postinstall script 'node lifecycleScripts/clean'.
npm ERR! This is most likely a problem with the nodegit package,
npm ERR! not with npm itself.
npm ERR! Tell the author that this fails on your system:
npm ERR!     node lifecycleScripts/clean
npm ERR! You can get their info via:
npm ERR!     npm owner ls nodegit
npm ERR! There is likely additional logging output above.

npm ERR! Please include the following file with any support request:
npm ERR!     /home/mihau/npm-debug.log

I will try to install it on some VM on clean system.

tbranyen commented on Apr 19, 2015
tbranyen
on Apr 19, 2015
Member
More actions
@myhau before you try on another system, can you provide the following information:

uname -a

You mentioned Ubuntu, but we need more information.
myhau commented on Apr 19, 2015
myhau
on Apr 19, 2015
More actions
uname -a output: Linux ubiquitous 3.16.0-36-generic #48-Ubuntu SMP Tue Apr 14 20:07:19 UTC 2015 i686 i686 i686 GNU/Linux
Here is info, I also edited previous comment to attach it.
tbranyen commented on Apr 19, 2015
tbranyen
on Apr 19, 2015
Member
More actions
Yeah it's 32bit, we haven't published a binary for that yet. I can do that in a few moments.
myhau commented on Apr 19, 2015
myhau
on Apr 19, 2015
More actions
Weird thing is, I've just installed it on system that has uname -a output Linux german-test 3.16.0-28-generic #37-Ubuntu SMP Mon Dec 8 17:22:00 UTC 2014 i686 i686 i686 GNU/Linux and it fetched library succesfully, and it works.
myhau commented on Apr 19, 2015
myhau
on Apr 19, 2015
More actions
I've solved it by purging nodejs and npm and installing them again properly, using tools like nvm, and then simply npm install -g nodegit fetched binary correctly (or maybe @tbranyen did you published binary in the meantime?). But I still don't know what was the issue.
johnhaley81 commented on Apr 19, 2015
johnhaley81
on Apr 19, 2015
Collaborator
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@Globegitter @tgriffo did that work for you guys as well?

As a side note I'd HIGHLY recommend installing node/npm through nvm. Life is so much easier.
davidfirst commented on Apr 19, 2015
davidfirst
on Apr 19, 2015
More actions
I'm using Mac, and just had the same issue.
It is working perfect with node.js v0.10.35. I tried to update node.js to v0.11.13 then I got the error:
Error: Cannot find module '../build/Debug/nodegit'

Then, tried to reinstall nodegit, but got errors similar to what myhau got.
Please let me know if you would like to see the output.

I ended up downgrading to node.js v0.10.35
tbranyen commented on Apr 19, 2015
tbranyen
on Apr 19, 2015
Member
More actions
Node 0.11 is unstable we don't support that. Use 0.12 or 0.10 (as you already have).
davidfirst commented on Apr 19, 2015
davidfirst
on Apr 19, 2015
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Edit: I see now that there is v0.12.2 will try that.

tbranyen by "Use 0.12" you mean 0.11.12? because I just tried it, and got the same error.

The reason why I tried to update to 0.11.x, is because I have an issue when trying to clone/pull it doesn't stop for the promise and continue with the execution. When trying to debug with node-inspector I got a message "Your Node version (v0.10.35) has a partial support of profiler".
tbranyen commented on Apr 19, 2015
tbranyen
on Apr 19, 2015
Member
More actions
No I mean 0.12 which is the latest stable Node.js minor.
davidfirst commented on Apr 19, 2015
davidfirst
on Apr 19, 2015
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tbranyen thank you very much! it is working now. (had a small error with "npm ERR! Attempt to unlock" but chmod helped there).
tgriffo commented on Apr 19, 2015
tgriffo
on Apr 19, 2015
More actions
Hi @johnhaley81, yes, working now. Thanks heaps!!
What I did: installed nvm, removed nodegit and reinstalled it.
johnhaley81 commented on Apr 20, 2015
johnhaley81
on Apr 20, 2015
Collaborator
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Sounds good. If something else crops up I'll be happy to re-open this issue.
johnhaley81
closed this as completed on Apr 20, 2015

ipika commented on Jun 14, 2015

ipika

on Jun 14, 2015

More actions

npm http GET https://registry.npmjs.org/nodegit
npm http 304 https://registry.npmjs.org/nodegit
npm http GET https://registry.npmjs.org/promisify-node
npm http GET https://registry.npmjs.org/which-native-nodish
npm http GET https://registry.npmjs.org/fs-extra
npm http GET https://registry.npmjs.org/nodegit-promise
npm http GET https://registry.npmjs.org/npm
npm http 304 https://registry.npmjs.org/promisify-node
npm http 304 https://registry.npmjs.org/fs-extra
npm http 304 https://registry.npmjs.org/nodegit-promise
npm http 304 https://registry.npmjs.org/which-native-nodish
npm http 304 https://registry.npmjs.org/npm
npm http GET https://registry.npmjs.org/find-parent-dir
npm http GET https://registry.npmjs.org/rimraf
npm http GET https://registry.npmjs.org/graceful-fs
npm http GET https://registry.npmjs.org/jsonfile
npm http GET https://registry.npmjs.org/asap
npm http GET https://registry.npmjs.org/asap
npm http 304 https://registry.npmjs.org/rimraf
npm http 304 https://registry.npmjs.org/graceful-fs
npm http 304 https://registry.npmjs.org/jsonfile
npm http GET https://registry.npmjs.org/glob
npm http 304 https://registry.npmjs.org/find-parent-dir
npm http 304 https://registry.npmjs.org/asap
npm http 304 https://registry.npmjs.org/asap
npm http 304 https://registry.npmjs.org/glob
npm http GET https://registry.npmjs.org/inflight
npm http GET https://registry.npmjs.org/inherits
npm http GET https://registry.npmjs.org/minimatch
npm http GET https://registry.npmjs.org/once
npm http 304 https://registry.npmjs.org/inflight
npm http 304 https://registry.npmjs.org/inherits
npm http 304 https://registry.npmjs.org/minimatch
npm http 304 https://registry.npmjs.org/once
npm http GET https://registry.npmjs.org/wrappy
npm http GET https://registry.npmjs.org/brace-expansion
npm http 304 https://registry.npmjs.org/brace-expansion
npm http GET https://registry.npmjs.org/balanced-match
npm http GET https://registry.npmjs.org/concat-map/0.0.1
npm http 304 https://registry.npmjs.org/wrappy
npm http 304 https://registry.npmjs.org/concat-map/0.0.1
npm http 304 https://registry.npmjs.org/balanced-match

> [email protected] install /usr/local/lib/node_modules/nodegit
> node lifecycleScripts/install

[nodegit] Fetching binary from S3.
[nodegit] Failed to install prebuilt binary, building manually.
[nodegit] Making sure dependencies are available and native code is generated
[nodegit] Everything is ready to go, attempting compilation
[nodegit] Building native node module.
{ [Error: Command failed: npm http request GET https://registry.npmjs.org/which-native-nodish
npm http request GET https://registry.npmjs.org/fs-extra
npm http request GET https://registry.npmjs.org/nodegit-promise
npm http request GET https://registry.npmjs.org/promisify-node
npm http request GET https://registry.npmjs.org/npm
npm ERR! Linux 3.13.0-46-generic
npm ERR! argv "node" "/usr/local/lib/node_modules/nodegit/node_modules/.bin/npm" "install" "--ignore-scripts"
npm ERR! node v0.10.25
npm ERR! npm  v2.11.2
npm ERR! code MODULE_NOT_FOUND

npm ERR! Cannot find module './_stream_duplex'
npm ERR! 
npm ERR! If you need help, you may report this error at:
npm ERR!     <https://github.com/npm/npm/issues>
npm ERR! Linux 3.13.0-46-generic
npm ERR! argv "node" "/usr/local/lib/node_modules/nodegit/node_modules/.bin/npm" "install" "--ignore-scripts"
npm ERR! node v0.10.25
npm ERR! npm  v2.11.2
npm ERR! path npm-debug.log.c2ce5cfcef3de005e0743ff24276d024
npm ERR! code ENOENT
npm ERR! errno 34

npm ERR! enoent ENOENT, open 'npm-debug.log.c2ce5cfcef3de005e0743ff24276d024'
npm ERR! enoent This is most likely not a problem with npm itself
npm ERR! enoent and is related to npm not being able to find a file.
npm ERR! enoent 
npm ERR! Linux 3.13.0-46-generic
npm ERR! argv "node" "/usr/local/lib/node_modules/nodegit/node_modules/.bin/npm" "install" "--ignore-scripts"
npm ERR! node v0.10.25
npm ERR! npm  v2.11.2
npm ERR! code MODULE_NOT_FOUND

npm ERR! Cannot find module './_stream_duplex'
npm ERR! 
npm ERR! If you need help, you may report this error at:
npm ERR!     <https://github.com/npm/npm/issues>
npm ERR! Linux 3.13.0-46-generic
npm ERR! argv "node" "/usr/local/lib/node_modules/nodegit/node_modules/.bin/npm" "install" "--ignore-scripts"
npm ERR! node v0.10.25
npm ERR! npm  v2.11.2
npm ERR! code MODULE_NOT_FOUND

npm ERR! Cannot find module './_stream_duplex'
npm ERR! 
npm ERR! If you need help, you may report this error at:
npm ERR!     <https://github.com/npm/npm/issues>
npm ERR! Linux 3.13.0-46-generic
npm ERR! argv "node" "/usr/local/lib/node_modules/nodegit/node_modules/.bin/npm" "install" "--ignore-scripts"
npm ERR! node v0.10.25
npm ERR! npm  v2.11.2
npm ERR! code MODULE_NOT_FOUND

npm ERR! Cannot find module './_stream_duplex'
npm ERR! 
npm ERR! If you need help, you may report this error at:
npm ERR!     <https://github.com/npm/npm/issues>
npm ERR! Linux 3.13.0-46-generic
npm ERR! argv "node" "/usr/local/lib/node_modules/nodegit/node_modules/.bin/npm" "install" "--ignore-scripts"
npm ERR! node v0.10.25
npm ERR! npm  v2.11.2
npm ERR! code MODULE_NOT_FOUND

npm ERR! Cannot find module './_stream_duplex'
npm ERR! 
npm ERR! If you need help, you may report this error at:
npm ERR!     <https://github.com/npm/npm/issues>

npm ERR! Please include the following file with any support request:
npm ERR!     /usr/local/lib/node_modules/nodegit/npm-debug.log
] killed: false, code: 1, signal: null }
undefined
[email protected] /usr/local/lib/node_modules/nodegit
├── [email protected] ([email protected])
├── [email protected] ([email protected])
├── [email protected] ([email protected], [email protected])
├── [email protected]
└── [email protected] ([email protected], [email protected], [email protected])

uname -a gives following
Linux XoXo 3.13.0-46-generic #79-Ubuntu SMP Tue Mar 10 20:06:50 UTC 2015 x86_64 x86_64 x86_64 GNU/Linux

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Issues on scientific linux 6.6 #521

Description

Activity

maxkorp commented on Mar 30, 2015

tgriffo commented on Apr 17, 2015

myhau commented on Apr 19, 2015

tbranyen commented on Apr 19, 2015

myhau commented on Apr 19, 2015

tbranyen commented on Apr 19, 2015

myhau commented on Apr 19, 2015

tbranyen commented on Apr 19, 2015

myhau commented on Apr 19, 2015

myhau commented on Apr 19, 2015

johnhaley81 commented on Apr 19, 2015

davidfirst commented on Apr 19, 2015

tbranyen commented on Apr 19, 2015

davidfirst commented on Apr 19, 2015

tbranyen commented on Apr 19, 2015

davidfirst commented on Apr 19, 2015

tgriffo commented on Apr 19, 2015

johnhaley81 commented on Apr 20, 2015

ipika commented on Jun 14, 2015

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