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GeezerVison is showing github.com — bug: Fatal Python error: Segmentation fault · Issue #463 · python-graphblas/python-graphblas Closed DescriptionI am getting errors when trying to Details(graphblas-dev) mymac@Mys-Mac-mini grgr % pytest graphblas Running tests with "suitesparse" backend, blocking=True, record=False, mapnumpy=False, runslow=False ============================================ test session starts ============================================ platform darwin -- Python 3.11.4, pytest-7.3.2, pluggy-1.0.0 rootdir: /Users/mymac/grgr configfile: setup.cfg plugins: cov-4.1.0 collected 684 items graphblas/tests/test_core.py ..... [ 0%] graphblas/tests/test_descriptor.py .. [ 1%] graphblas/tests/test_dtype.py .................. [ 3%] graphblas/tests/test_formatting.py FFFFFFFFF.FFFFFFFFF..........FFFFFF......FF....F.FF [ 11%] graphblas/tests/test_infix.py .......... [ 12%] graphblas/tests/test_io.py ......F...sss [ 14%] graphblas/tests/test_mask.py ...... [ 15%] graphblas/tests/test_matrix.py ...............................................s.s..............ss.... [ 25%] ...FFFF............F.....................s..ss.....FF......F...F... [ 35%] graphblas/tests/test_numpyops.py .sssss [ 36%] graphblas/tests/test_op.py .............Fssss.....sssss..s.s.s....... [ 42%] graphblas/tests/test_operator_types.py .... [ 42%] graphblas/tests/test_pickle.py ssss. [ 43%] graphblas/tests/test_prefix_scan.py ................................................................. [ 53%] ..................................................................................................... [ 67%] ........................................ [ 73%] graphblas/tests/test_pygraphblas.py sss [ 74%] graphblas/tests/test_recorder.py ........ [ 75%] graphblas/tests/test_resolving.py ............... [ 77%] graphblas/tests/test_scalar.py ...........s..F.................. [ 82%] graphblas/tests/test_ss_utils.py FFFFFatal Python error: Segmentation fault Current thread 0x00000001f6e45e00 (most recent call first): File "/Users/mymac/grgr/graphblas/ss/_core.py", line 227 in __getitem__ File "/Users/mymac/grgr/graphblas/tests/test_ss_utils.py", line 189 in test_about File "/Users/mymac/miniconda3/envs/graphblas-dev/lib/python3.11/site-packages/_pytest/python.py", line 194 in pytest_pyfunc_call File "/Users/mymac/miniconda3/envs/graphblas-dev/lib/python3.11/site-packages/pluggy/_callers.py", line 39 in _multicall File "/Users/mymac/miniconda3/envs/graphblas-dev/lib/python3.11/site-packages/pluggy/_manager.py", line 80 in _hookexec File "/Users/mymac/miniconda3/envs/graphblas-dev/lib/python3.11/site-packages/pluggy/_hooks.py", line 265 in __call__ File "/Users/mymac/miniconda3/envs/graphblas-dev/lib/python3.11/site-packages/_pytest/python.py", line 1799 in runtest File "/Users/mymac/miniconda3/envs/graphblas-dev/lib/python3.11/site-packages/_pytest/runner.py", line 169 in pytest_runtest_call File "/Users/mymac/miniconda3/envs/graphblas-dev/lib/python3.11/site-packages/pluggy/_callers.py", line 39 in _multicall File "/Users/mymac/miniconda3/envs/graphblas-dev/lib/python3.11/site-packages/pluggy/_manager.py", line 80 in _hookexec File "/Users/mymac/miniconda3/envs/graphblas-dev/lib/python3.11/site-packages/pluggy/_hooks.py", line 265 in __call__ File "/Users/mymac/miniconda3/envs/graphblas-dev/lib/python3.11/site-packages/_pytest/runner.py", line 262 in <lambda> File "/Users/mymac/miniconda3/envs/graphblas-dev/lib/python3.11/site-packages/_pytest/runner.py", line 341 in from_call File "/Users/mymac/miniconda3/envs/graphblas-dev/lib/python3.11/site-packages/_pytest/runner.py", line 261 in call_runtest_hook File "/Users/mymac/miniconda3/envs/graphblas-dev/lib/python3.11/site-packages/_pytest/runner.py", line 222 in call_and_report File "/Users/mymac/miniconda3/envs/graphblas-dev/lib/python3.11/site-packages/_pytest/runner.py", line 133 in runtestprotocol File "/Users/mymac/miniconda3/envs/graphblas-dev/lib/python3.11/site-packages/_pytest/runner.py", line 114 in pytest_runtest_protocol File "/Users/mymac/miniconda3/envs/graphblas-dev/lib/python3.11/site-packages/pluggy/_callers.py", line 39 in _multicall File "/Users/mymac/miniconda3/envs/graphblas-dev/lib/python3.11/site-packages/pluggy/_manager.py", line 80 in _hookexec File "/Users/mymac/miniconda3/envs/graphblas-dev/lib/python3.11/site-packages/pluggy/_hooks.py", line 265 in __call__ File "/Users/mymac/miniconda3/envs/graphblas-dev/lib/python3.11/site-packages/_pytest/main.py", line 348 in pytest_runtestloop File "/Users/mymac/miniconda3/envs/graphblas-dev/lib/python3.11/site-packages/pluggy/_callers.py", line 39 in _multicall File "/Users/mymac/miniconda3/envs/graphblas-dev/lib/python3.11/site-packages/pluggy/_manager.py", line 80 in _hookexec File "/Users/mymac/miniconda3/envs/graphblas-dev/lib/python3.11/site-packages/pluggy/_hooks.py", line 265 in __call__ File "/Users/mymac/miniconda3/envs/graphblas-dev/lib/python3.11/site-packages/_pytest/main.py", line 323 in _main File "/Users/mymac/miniconda3/envs/graphblas-dev/lib/python3.11/site-packages/_pytest/main.py", line 269 in wrap_session File "/Users/mymac/miniconda3/envs/graphblas-dev/lib/python3.11/site-packages/_pytest/main.py", line 316 in pytest_cmdline_main File "/Users/mymac/miniconda3/envs/graphblas-dev/lib/python3.11/site-packages/pluggy/_callers.py", line 39 in _multicall File "/Users/mymac/miniconda3/envs/graphblas-dev/lib/python3.11/site-packages/pluggy/_manager.py", line 80 in _hookexec File "/Users/mymac/miniconda3/envs/graphblas-dev/lib/python3.11/site-packages/pluggy/_hooks.py", line 265 in __call__ File "/Users/mymac/miniconda3/envs/graphblas-dev/lib/python3.11/site-packages/_pytest/config/__init__.py", line 166 in main File "/Users/mymac/miniconda3/envs/graphblas-dev/lib/python3.11/site-packages/_pytest/config/__init__.py", line 189 in console_main File "/Users/mymac/miniconda3/envs/graphblas-dev/bin/pytest", line 10 in <module> Extension modules: numpy.core._multiarray_umath, numpy.core._multiarray_tests, numpy.linalg._umath_linalg, numpy.fft._pocketfft_internal, numpy.random._common, numpy.random.bit_generator, numpy.random._bounded_integers, numpy.random._mt19937, numpy.random.mtrand, numpy.random._philox, numpy.random._pcg64, numpy.random._sfc64, numpy.random._generator, suitesparse_graphblas.utils, _cffi_backend, yaml._yaml, scipy._lib._ccallback_c, numba.core.typeconv._typeconv, numba._helperlib, numba._dynfunc, numba._dispatcher, numba.core.runtime._nrt_python, numba.np.ufunc._internal, numba.experimental.jitclass._box, scipy.linalg._fblas, scipy.linalg._flapack, scipy.linalg._cythonized_array_utils, scipy.linalg._flinalg, scipy.linalg._solve_toeplitz, scipy.linalg._matfuncs_sqrtm_triu, scipy.linalg.cython_lapack, scipy.linalg.cython_blas, scipy.linalg._matfuncs_expm, scipy.linalg._decomp_update, scipy.sparse._sparsetools, _csparsetools, scipy.sparse._csparsetools, scipy.sparse.linalg._isolve._iterative, scipy.sparse.linalg._dsolve._superlu, scipy.sparse.linalg._eigen.arpack._arpack, scipy.sparse.csgraph._tools, scipy.sparse.csgraph._shortest_path, scipy.sparse.csgraph._traversal, scipy.sparse.csgraph._min_spanning_tree, scipy.sparse.csgraph._flow, scipy.sparse.csgraph._matching, scipy.sparse.csgraph._reordering, pandas._libs.tslibs.np_datetime, pandas._libs.tslibs.dtypes, pandas._libs.tslibs.base, pandas._libs.tslibs.nattype, pandas._libs.tslibs.timezones, pandas._libs.tslibs.ccalendar, pandas._libs.tslibs.fields, pandas._libs.tslibs.timedeltas, pandas._libs.tslibs.tzconversion, pandas._libs.tslibs.timestamps, pandas._libs.properties, pandas._libs.tslibs.offsets, pandas._libs.tslibs.strptime, pandas._libs.tslibs.parsing, pandas._libs.tslibs.conversion, pandas._libs.tslibs.period, pandas._libs.tslibs.vectorized, pandas._libs.ops_dispatch, pandas._libs.missing, pandas._libs.hashtable, pandas._libs.algos, pandas._libs.interval, pandas._libs.lib, pandas._libs.hashing, pandas._libs.tslib, pandas._libs.ops, pandas._libs.arrays, pandas._libs.sparse, pandas._libs.reduction, pandas._libs.indexing, pandas._libs.index, pandas._libs.internals, pandas._libs.join, pandas._libs.writers, pandas._libs.window.aggregations, pandas._libs.window.indexers, pandas._libs.reshape, pandas._libs.groupby, pandas._libs.testing, pandas._libs.parsers, pandas._libs.json, numpy.linalg.lapack_lite, scipy.io.matlab._mio_utils, scipy.io.matlab._streams, scipy.io.matlab._mio5_utils (total: 92) zsh: segmentation fault pytest graphblas I am not sure if it's related or not, but this was in a new environment and when installing the (graphblas-dev) mymac@Mys-Mac-mini grgr % pip install -e . --no-deps Obtaining file:///Users/mymac/grgr Installing build dependencies ... done Checking if build backend supports build_editable ... done Getting requirements to build editable ... done Preparing editable metadata (pyproject.toml) ... done Building wheels for collected packages: python-graphblas Building editable for python-graphblas (pyproject.toml) ... done Created wheel for python-graphblas: filename=python_graphblas-2022.10.1+23.g944d075-0.editable-py3-none-any.whl size=10787 sha256=f4d3aba7a797bf1346309bb0e01cbb0667b46d332561c4cc1f2faebfb296398e Stored in directory: /private/var/folders/v6/8sdq1_2s7gb3yppns266v4gw0000gn/T/pip-ephem-wheel-cache-9tefmp3f/wheels/17/c5/da/31eae62840467c9a2b0218149aa40c4b2b0b67dcfbf41869f5 Successfully built python-graphblas Installing collected packages: python-graphblas Successfully installed python-graphblas-2022.10.1+23.g944d075 Activity
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