GeezerVison

Pull requests

• fix: improved, more robust, and more version agnostic serialization of params for passing them to scripts, wrappers, and notebooks

  #4385·johanneskoester opened Nov 11, 2026Contributor·3 of 7 tasks·

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• fix: deploy and cache software envs in within-first order

  #4383·tedil opened Nov 6, 2026Contributor·5 of 7 tasks·

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• fix: update xonsh command flags in execute_script method

  #4382·jsquaredosquared opened Nov 6, 2026Contributor·3 of 7 tasks·

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• feat: add --edit-scripts cli option to complement --edit-notebooks

  #4381·brynpickering opened Nov 5, 2026·7 tasks done·

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• fix: do not report a missing file as protected when the existence cache is stale

  #4380·thelastbackspace opened Nov 5, 2026·5 of 7 tasks·

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• feat: cleanup software asset cache afer run

  #4377·johanneskoester opened Nov 3, 2026Contributor·3 of 7 tasks·

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• perf: reduce stat calls when checking output mtimes of finished jobs

  #4373·Adelagric opened Nov 1, 2026Contributor·5 of 7 tasks·

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• fix: prevent scheduler reevaluation timers from accumulating

  #4372·Adelagric opened Nov 1, 2026Contributor·6 of 7 tasks·

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• fix: respect rule pathvars in storage paths and multiext caches

  #4369·jmzhang1911 opened Oct 31, 2026·6 of 7 tasks·

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• feat: render Vega/Vega-Lite results in HTML report

  #4360·christykanto opened Oct 24, 2026·7 tasks·

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• fix: add the software column to 9.x metadata databases in the db backend

  #4359·tedil opened Oct 23, 2026Contributor·7 tasks done·

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• docs: use image_uri and --sdm container in software deployment examples

  #4358·tedil opened Oct 23, 2026Contributor·5 of 7 tasks·

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• fix: type the self-returning Namedlist methods with Self

  #4352·ZacKienzle2 opened Oct 23, 2026·3 tasks done·

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• feat: add IDE script debugging capabilities with --debug-scripts CLI flag

  #4351·brynpickering opened Oct 22, 2026·5 of 7 tasks·

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• fix: handle SourceFile paths in LocalGitFile.join

  #4349·Smeds opened Oct 19, 2026Contributor·4 of 7 tasks·

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• fix: accept single-character config keys given on the command line

  #4348·ybai08 opened Oct 18, 2026·6 of 7 tasks·

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• fix: report correct line numbers for syntax errors found while parsing a Snakefile

  #4347·ybai08 opened Oct 18, 2026·6 of 7 tasks·

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• test: re-enable test_conda_global in pixi tasks

  #4345·mschilli87 opened Oct 16, 2026Contributor·3 of 7 tasks·

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• fix: resolve YAML for global conda env injection in remote modules

  #4343·mschilli87 opened Oct 16, 2026Contributor·5 of 7 tasks·

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• fix: correct export_to_cwl and other fixes

  #4339·Hocnonsense opened Oct 14, 2026Contributor·1 of 7 tasks·

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• fix: check masked jobs the needrun BFS skips for ancient inputs

  #4338·ZacKienzle2 opened Oct 12, 2026·7 tasks done·

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• feat: expose rulename in default and set resource expressions

  #4336·ZacKienzle2 opened Oct 11, 2026·7 tasks done·

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• fix: --lint AttributeError for rules without conda/container since #3339

  #4334·glaziermag opened Oct 8, 2026·6 of 7 tasks·

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• fix: stabilize group id selection and defer service consumer check for group-local services

  #4333·barlowa124 opened Oct 6, 2026·6 of 7 tasks·

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• test: cover module keyword after importing a module named parse

  #4332·barlowa124 opened Oct 5, 2026·6 of 7 tasks·

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