Issues

Issues

• Save good channels to fast5 in segment.py

  uwmisl/poretitioner#102 · opened on Mar 17, 2021

• Parameterize or define hardcoded values in judge_channels

  uwmisl/poretitioner#101 · opened on Mar 17, 2021

• Implement Classification; Restore Classification unit tests

  uwmisl/poretitioner#92 · opened on Feb 17, 2021 · 1.0.0

• Implement plugins for Filters and Classifiers

  uwmisl/poretitioner#91 · opened on Feb 17, 2021 · 1.0.0

• Implement Filtering; Restore Filtering

  uwmisl/poretitioner#90 · opened on Feb 17, 2021

• Restore quantify unit tests

  uwmisl/poretitioner#89 · opened on Feb 17, 2021

• Restore Filtering unit tests

  uwmisl/poretitioner#88 · opened on Feb 17, 2021 · 1.0.0

• Optimize time and space consumption.

  uwmisl/poretitioner#85 · opened on Feb 6, 2021 · 1.1
  2

• Plumb through the new Signal and H5 models

  uwmisl/poretitioner#83 · opened on Feb 4, 2021 · 1.0.0
  1

• Implement getters for data in the fast5 files

  uwmisl/poretitioner#81 · opened on Feb 2, 2021

• Implement compression for fast5 files

  uwmisl/poretitioner#79 · opened on Feb 2, 2021

• Move modules up 1 level

  uwmisl/poretitioner#78 · opened on Feb 2, 2021

• Create a demo jupyter notebook documenting usage

  uwmisl/poretitioner#77 · opened on Feb 2, 2021 · 1.0.0

• Deprecate the random forest for the sake of image size

  uwmisl/poretitioner#76 · opened on Feb 2, 2021 · 1.0.0

• Need to a better way to configure poretitioner?

  uwmisl/poretitioner#73 · opened on Dec 15, 2020 · 1.0.0

• Implement filter_like_existing fast5 file

  uwmisl/poretitioner#68 · opened on Oct 8, 2020

• Parallelize filtering

  uwmisl/poretitioner#67 · opened on Oct 3, 2020

• Define modes for running poretitioner

  uwmisl/poretitioner#65 · opened on Oct 1, 2020 · 1.0.0

• Validate configuration parameters before starting the pipeline (e.g. capture_f5_dir)

  uwmisl/poretitioner#64 · opened on Oct 1, 2020 · 1.0.0

• Support developer installation on linux

  uwmisl/poretitioner#62 · opened on Sep 25, 2020 · 1.0.0
  1

• Create test data for arbitrary voltage flips

  uwmisl/poretitioner#61 · opened on Sep 25, 2020 · 1.0.0
  1

• Cache pytorch

  uwmisl/poretitioner#58 · opened on May 1, 2020
  1

• Use ONT style for reading/writing fast5 data

  uwmisl/poretitioner#55 · opened on Apr 30, 2020

• Support CPU and GPU for pytorch

  uwmisl/poretitioner#41 · opened on Apr 27, 2020 · 1.0.0

• Implement sklearn suggestions for model maintainability

  uwmisl/poretitioner#38 · opened on Apr 27, 2020