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GeezerVison is showing github.com — xtensor-python/include/xtensor-python/pycontainer.hpp at master · xtensor-stack/xtensor-python Expand file tree/ Copy pathpycontainer.hppMore file actions 523 lines (452 loc) · 16.6 KB / Copy pathpycontainer.hppFile metadata and controls523 lines (452 loc) · 16.6 KB 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301 302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319 320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337 338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355 356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371 372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389 390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407 408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425 426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443 444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461 462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479 480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495 496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513 514 515 516 517 518 519 520 521 522 523 /*************************************************************************** * Copyright (c) Wolf Vollprecht, Johan Mabille and Sylvain Corlay * * Copyright (c) QuantStack * * * * Distributed under the terms of the BSD 3-Clause License. * * * * The full license is in the file LICENSE, distributed with this software. * ****************************************************************************/ #ifndef PY_CONTAINER_HPP #define PY_CONTAINER_HPP #include <cmath> #include <functional> #include <numeric> #include <sstream> #include "pybind11/complex.h" #include "pybind11/pybind11.h" #include "pybind11/numpy.h" #ifndef FORCE_IMPORT_ARRAY #define NO_IMPORT_ARRAY #endif #ifndef PY_ARRAY_UNIQUE_SYMBOL #define PY_ARRAY_UNIQUE_SYMBOL xtensor_python_ARRAY_API #endif #define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION #include "numpy/arrayobject.h" // Required because pyconfig.hpp defines copysign to _copysign #undef copysign #include <cmath> #include "xtensor/containers/xcontainer.hpp" #include "xtl/xsequence.hpp" namespace xt { inline void import_numpy(); /** * @class pycontainer * @brief Base class for xtensor containers wrapping numpy arryays. * * The pycontainer class should not be instantiated directly. Instead, used should * use pytensor and pyarray instancs. * * @tparam D The derived type, i.e. the inheriting class for which pycontainer * provides the interface. */ template <class D> class pycontainer : public pybind11::object, public xcontainer<D> { public: using derived_type = D; using base_type = xcontainer<D>; using inner_types = xcontainer_inner_types<D>; using storage_type = typename inner_types::storage_type; using value_type = typename storage_type::value_type; using reference = typename storage_type::reference; using const_reference = typename storage_type::const_reference; using pointer = typename storage_type::pointer; using const_pointer = typename storage_type::const_pointer; using size_type = typename storage_type::size_type; using difference_type = typename storage_type::difference_type; using shape_type = typename inner_types::shape_type; using strides_type = typename inner_types::strides_type; using backstrides_type = typename inner_types::backstrides_type; using inner_shape_type = typename inner_types::inner_shape_type; using inner_strides_type = typename inner_types::inner_strides_type; using iterable_base = xcontainer<D>; using iterator = typename iterable_base::iterator; using const_iterator = typename iterable_base::const_iterator; using stepper = typename iterable_base::stepper; using const_stepper = typename iterable_base::const_stepper; template <class S = shape_type> void resize(const S& shape); template <class S = shape_type> void resize(const S& shape, layout_type l); template <class S = shape_type> void resize(const S& shape, const strides_type& strides); template <class S = shape_type> auto& reshape(S&& shape, layout_type layout = base_type::static_layout) &; layout_type layout() const; bool is_contiguous() const noexcept; using base_type::operator(); using base_type::operator[]; using base_type::begin; using base_type::end; protected: pycontainer(); ~pycontainer() = default; pycontainer(pybind11::handle h, borrowed_t); pycontainer(pybind11::handle h, stolen_t); pycontainer(const pybind11::object& o); pycontainer(const pycontainer&) = default; pycontainer& operator=(const pycontainer&) = default; pycontainer(pycontainer&&) = default; pycontainer& operator=(pycontainer&&) = default; static derived_type ensure(pybind11::handle h); static bool check_(pybind11::handle h); static PyObject* raw_array_t(PyObject* ptr); derived_type& derived_cast(); const derived_type& derived_cast() const; PyArrayObject* python_array() const; size_type get_buffer_size() const; private: #if (PYBIND11_VERSION_MAJOR == 2 && PYBIND11_VERSION_MINOR >= 3) || PYBIND11_VERSION_MAJOR >= 3 // Prevent ambiguous overload resolution for operators defined for // both xt::xcontainer and pybind11::object. using pybind11::object::operator~; using pybind11::object::operator+; using pybind11::object::operator-; using pybind11::object::operator*; using pybind11::object::operator/; using pybind11::object::operator|; using pybind11::object::operator&; using pybind11::object::operator^; using pybind11::object::operator<<; using pybind11::object::operator>>; #endif }; namespace detail { template <class T, class E = void> struct numpy_traits; template <class T> struct numpy_traits<T, std::enable_if_t<pybind11::detail::satisfies_any_of<T, std::is_arithmetic, xtl::is_complex>::value>> { private: // On Windows 64 bits, NPY_INT != NPY_INT32 and NPY_UINT != NPY_UINT32 // We use the NPY_INT32 and NPY_UINT32 which are consistent with the values // of NPY_LONG and NPY_ULONG // On Linux x64, NPY_INT64 != NPY_LONGLONG and NPY_UINT64 != NPY_ULONGLONG, // we use the values of NPY_INT64 and NPY_UINT64 which are consistent with the // values of NPY_LONG and NPY_ULONG. constexpr static const int value_list[15] = { NPY_BOOL, NPY_BYTE, NPY_UBYTE, NPY_SHORT, NPY_USHORT, NPY_INT32, NPY_UINT32, NPY_INT64, NPY_UINT64, NPY_FLOAT, NPY_DOUBLE, NPY_LONGDOUBLE, NPY_CFLOAT, NPY_CDOUBLE, NPY_CLONGDOUBLE}; public: using value_type = std::remove_const_t<T>; static constexpr int type_num = value_list[pybind11::detail::is_fmt_numeric<value_type>::index]; }; // On Linux x64, NPY_INT64 != NPY_LONGLONG and NPY_UINT64 != NPY_ULONGLONG // NPY_LONGLONG and NPY_ULONGLONG must be adjusted so the right type is // selected template <bool> struct numpy_enum_adjuster { static inline int pyarray_type(PyArrayObject* obj) { return PyArray_TYPE(obj); } }; template <> struct numpy_enum_adjuster<true> { static inline int pyarray_type(PyArrayObject* obj) { int res = PyArray_TYPE(obj); if(res == NPY_LONGLONG || res == NPY_ULONGLONG) { res -= 2; } return res; } }; inline int pyarray_type(PyArrayObject* obj) { return numpy_enum_adjuster<NPY_LONGLONG != NPY_INT64>::pyarray_type(obj); } template <class T> void default_initialize_impl(T& /*storage*/, std::false_type) { } template <class T> void default_initialize_impl(T& storage, std::true_type) { using value_type = typename T::value_type; storage[0] = value_type{}; } template <class T> void default_initialize(T& storage) { using value_type = typename T::value_type; default_initialize_impl(storage, std::is_copy_assignable<value_type>()); } template <class T> bool check_array_type(const pybind11::handle& src, std::true_type) { int type_num = xt::detail::numpy_traits<T>::type_num; return xt::detail::pyarray_type(reinterpret_cast<PyArrayObject*>(src.ptr())) == type_num; } template <class T> bool check_array_type(const pybind11::handle& src, std::false_type) { return PyArray_EquivTypes((PyArray_Descr*) pybind11::detail::array_proxy(src.ptr())->descr, (PyArray_Descr*) pybind11::dtype::of<T>().ptr()); } template <class T> bool check_array(const pybind11::handle& src) { using is_arithmetic_type = std::integral_constant<bool, bool(pybind11::detail::satisfies_any_of<T, std::is_arithmetic, xtl::is_complex>::value)>; return PyArray_Check(src.ptr()) && check_array_type<T>(src, is_arithmetic_type{}); } } /****************************** * pycontainer implementation * ******************************/ template <class D> inline pycontainer<D>::pycontainer() : pybind11::object() { } template <class D> inline pycontainer<D>::pycontainer(pybind11::handle h, borrowed_t b) : pybind11::object(h, b) { } template <class D> inline pycontainer<D>::pycontainer(pybind11::handle h, stolen_t s) : pybind11::object(h, s) { } template <class D> inline pycontainer<D>::pycontainer(const pybind11::object& o) : pybind11::object(raw_array_t(o.ptr()), pybind11::object::stolen_t{}) { if (!this->m_ptr) { throw pybind11::error_already_set(); } } template <class D> inline auto pycontainer<D>::ensure(pybind11::handle h) -> derived_type { auto result = pybind11::reinterpret_steal<derived_type>(raw_array_t(h.ptr())); if (result.ptr() == nullptr) { PyErr_Clear(); } return result; } template <class D> inline bool pycontainer<D>::check_(pybind11::handle h) { return detail::check_array<typename D::value_type>(h); } template <class D> inline PyObject* pycontainer<D>::raw_array_t(PyObject* ptr) { if (ptr == nullptr) { return nullptr; } auto dtype = pybind11::detail::npy_format_descriptor<value_type>::dtype(); auto res = PyArray_FromAny(ptr, (PyArray_Descr *) dtype.release().ptr(), 0, 0, NPY_ARRAY_ENSUREARRAY | NPY_ARRAY_FORCECAST, nullptr); return res; } template <class D> inline PyArrayObject* pycontainer<D>::python_array() const { return reinterpret_cast<PyArrayObject*>(this->m_ptr); } template <class D> inline auto pycontainer<D>::get_buffer_size() const -> size_type { const size_type& (*min)(const size_type&, const size_type&) = std::min<size_type>; size_type min_stride = this->strides().empty() ? size_type(1) : std::max(size_type(1), std::accumulate(this->strides().cbegin(), this->strides().cend(), std::numeric_limits<size_type>::max(), min)); return min_stride * static_cast<size_type>(PyArray_SIZE(this->python_array())); } template <class D> inline auto pycontainer<D>::derived_cast() -> derived_type& { return *static_cast<derived_type*>(this); } template <class D> inline auto pycontainer<D>::derived_cast() const -> const derived_type& { return *static_cast<const derived_type*>(this); } namespace detail { template <class S> struct check_dims { static bool run(std::size_t) { return true; } }; template <class T, std::size_t N> struct check_dims<std::array<T, N>> { static bool run(std::size_t new_dim) { if(new_dim != N) { std::ostringstream err_msg; err_msg << "Invalid conversion to pycontainer, expecting a container of dimension " << N << ", got a container of dimension " << new_dim << "."; throw std::runtime_error(err_msg.str()); } return new_dim == N; } }; } /** * resizes the container. * @param shape the new shape */ template <class D> template <class S> inline void pycontainer<D>::resize(const S& shape) { if (shape.size() != this->dimension() || !std::equal(std::begin(shape), std::end(shape), std::begin(this->shape()))) { resize(shape, layout_type::row_major); } } /** * resizes the container. * @param shape the new shape * @param l the new layout */ template <class D> template <class S> inline void pycontainer<D>::resize(const S& shape, layout_type l) { strides_type strides = xtl::make_sequence<strides_type>(shape.size(), size_type(1)); compute_strides(shape, l, strides); resize(shape, strides); } /** * resizes the container. * @param shape the new shape * @param strides the new strides */ template <class D> template <class S> inline void pycontainer<D>::resize(const S& shape, const strides_type& strides) { detail::check_dims<shape_type>::run(shape.size()); derived_type tmp(xtl::forward_sequence<shape_type, decltype(shape)>(shape), strides); *static_cast<derived_type*>(this) = std::move(tmp); } template <class D> template <class S> inline auto& pycontainer<D>::reshape(S&& shape, layout_type layout) & { if (compute_size(shape) != this->size()) { throw std::runtime_error("Cannot reshape with incorrect number of elements (" + std::to_string(this->size()) + " vs " + std::to_string(compute_size(shape)) + ")"); } detail::check_dims<shape_type>::run(shape.size()); layout = default_assignable_layout(layout); NPY_ORDER npy_layout; if (layout == layout_type::row_major) { npy_layout = NPY_CORDER; } else if (layout == layout_type::column_major) { npy_layout = NPY_FORTRANORDER; } else { throw std::runtime_error("Cannot reshape with unknown layout_type."); } using shape_ptr = typename std::decay_t<S>::pointer; PyArray_Dims dims = {reinterpret_cast<npy_intp*>(const_cast<shape_ptr>(shape.data())), static_cast<int>(shape.size())}; auto new_ptr = PyArray_Newshape((PyArrayObject*) this->ptr(), &dims, npy_layout); auto old_ptr = this->ptr(); this->ptr() = new_ptr; Py_XDECREF(old_ptr); this->derived_cast().init_from_python(); return *this; } /** * Return the layout_type of the container * @return layout_type of the container */ template <class D> inline layout_type pycontainer<D>::layout() const { if (PyArray_CHKFLAGS(python_array(), NPY_ARRAY_C_CONTIGUOUS)) { return layout_type::row_major; } else if (PyArray_CHKFLAGS(python_array(), NPY_ARRAY_F_CONTIGUOUS)) { return layout_type::column_major; } else { return layout_type::dynamic; } } /** * Return whether or not the container uses contiguous buffer * @return Boolean for contiguous buffer */ template <class D> inline bool pycontainer<D>::is_contiguous() const noexcept { if (this->strides().size() == 0) { return true; } else if (PyArray_CHKFLAGS(python_array(), NPY_ARRAY_C_CONTIGUOUS)) { return 1 == this->strides().back(); } else if (PyArray_CHKFLAGS(python_array(), NPY_ARRAY_F_CONTIGUOUS)) { return 1 == this->strides().front(); } else { return false; } } /** * Import the numpy Python module. */ inline void import_numpy() { #ifdef FORCE_IMPORT_ARRAY if (_import_array() < 0) { PyErr_Print(); PyErr_SetString(PyExc_ImportError, "numpy.core.multiarray failed to import"); } #endif } #if defined(__GNUC__) && !defined(__clang__) namespace workaround { // Fixes "undefined symbol" issues inline void long_long_allocator() { std::allocator<long long> a; std::allocator<unsigned long long> b; std::allocator<double> c; std::allocator<std::complex<double>> d; } } #endif } #endif |
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