Generate Config File

Number of FASTQ file(s) per run: (e.g. specify 2 for paired-end)

Assign final barcodes:

Extraction pattern:

Output options

Interleave and stream to standard output instead of separate FASTQ files (--pipe)
Put identified tag names in sequence identifier (--mod-names)
Put extractions in sequence identifier (--x-names)

tag	id	group	distance (error tolerance)			location			minFinds	maxFinds	initiator	terminator	exclude	left (trim)		right (trim)		next	previous	sub	partial5		partial3
tag	id	group	substitutions	indels	total	file	start position	end position	minFinds	maxFinds	initiator	terminator	exclude	left (trim)		right (trim)		next	previous	sub	min match	mismatch freq	min match	mismatch freq

Test Run

Command:

Output: