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  Protein abundance across several organisms
• • • Proteins & Proteomes

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  prolfqua

  R package for protein differential expression analysis
• • • Glycomics

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  HMO-Glycologue

  Simulator of Human Milk Oligosaccharide synthesis
• • • Transcriptomics

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  ASAP

  Web-based, cooperative portal for single-cell data analyses
• • • Systems Biology

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  Cellosaurus

  Knowledge resource on cell lines
• • • Systems Biology

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  Cellosaurus SPARQL endpoint

  SPARQL access to Cellosaurus
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  Cellosaurus STR similarity search tool
• • • Transcriptomics
  • • Evolution biology

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  Bgee

  Gene expression expertise
• • • Transcriptomics
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  Bgee SPARQL endpoint

  SPARQL access to the Bgee gene expression database
• • • Proteins & Proteomes
  • • Systems Biology

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  STRING

  Protein-protein interaction networks and enrichment analysis
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  UniProtKB

  Protein sequence database
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  UniProt SPARQL endpoint

  SPARQL access to UniProt and related data
• • • Proteins & Proteomes

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  UniProtKB/Swiss-Prot

  Protein knowledgebase
• • • Evolution & Phylogeny

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  OMA

  Orthology inference among complete genomes
• • • Evolution & Phylogeny

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  SPARQL access to the OMA Orthology database
• • • Evolution & Phylogeny

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  OrthoDB

  Ortholog evolutionary and functional annotations
• • • Evolution & Phylogeny

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  OrthoDB SPARQL endpoint

  SPARQL access to the OrthoDB catalog of orthologs
• • • Proteins & Proteomes
  • • Structural Biology

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  SWISS-MODEL Repository

  Protein structure homology models
• • • Proteins & Proteomes
  • • Glycomics

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  GlyConnect

  Integrated data platform to study glycosylation
• • • Proteins & Proteomes
  • • Glycomics

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  UniLectin

  Structural and functional classification of lectins
• • • Transcriptomics
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  SwissRegulon

  Database of genome-wide annotations of regulatory sites
• • • Proteins & Proteomes
  • • Structural analysis

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  SwissTargetPrediction

  Target prediction for bioactive small molecules
• • • Transcriptomics

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  PolyAsite

  Database of curated RNA polyadenylation sites
• • • Transcriptomics
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  CRUNCH

  Automated pipeline for ChIP-seq data analysis
• • • Proteins & Proteomes
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  MatrixDB

  Extracellular proteins and polysaccharides interactions
• • • Genes & Genomes
  • • Systems Biology

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  cancercelllines.org

  Genomic variants in human cancer cell lines
• • • Genomics
  • • Systems Biology

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  arrayMAP

  Curated array data repository for cancer genomics
• • • Proteins & Proteomes
  • • Glycomics

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  SugarBind

  Pathogen Sugar-Binding Database
• • • Genomics

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  SNP2TFBS

  Regulatory SNPs affecting TF binding site affinity
• • • Genes & Genomes
  • • Systems Biology

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  Progenetix

  Genomic profiles of cancer samples with focus on CNV
• • • Genomics

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  EPD

  Eukaryotic Promoter Database
• • • Genes & Genomes
  • • Evolution & Phylogeny

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  SwissOrthology

  One-stop shop for orthologs
• • • Structural Biology

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  ModelArchive

  Repository of predicted macromolecular structure models
• • • Transcriptomics

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  miRmap

  Prediction of microRNA target repression strength
• • • Genes & Genomes
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  CREMA

  Cis-Regulatory Element Motif Activities
• • • Genomics
  • • Evolution biology

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  Selectome

  Database of positive selection
• • • Structural Biology
  • • Glycomics

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  UniCarb-DB

  Glycan structures and associated mass spectrometry data
• • • AI and machine learning

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  Variomes

  Search engine to support the curation of genomic variants
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  • • Metabolomics

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  MetaNetX

  Metabolic network repository & analysis
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  • • Metabolomics

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  MetaNetX SPARQL endpoint

  SPARQL access to MetaNetX
• • • Proteins & Proteomes

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  ABCD

  Database of chemically defined antibodies
• • • Transcriptomics

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  TagScan

  Genome-wide sequence tag scanner
• • • Transcriptomics

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  Human Cell Atlas

  Mapping the human body at the cellular level
• • • Transcriptomics
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  • • Systems Biology

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  NOODAI

  Multi-omics data analysis and integration
• • • Genes & Genomes
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  MetaGraph

  Petabase-scale sequence search
• • • Proteins & Proteomes
  • • Evolution & Phylogeny

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  Orthology Benchmarking

  Quest for Orthologs benchmarking service
• • • Proteins & Proteomes
  • • AI and machine learning

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  MHC Motif Atlas

  MHC Motif Atlas
• • • Systems Biology

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  SPHN Metadata Catalog

  Central access point for FAIR health datasets in Switzerland
• • • Systems Biology

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  SPHN SPARQL endpoint

  SPARQL access to the SPHN data
• • • Metagenomics
  • • Systems Biology

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  HuMSub Catalog

  Human gut microbiota subspecies catalog
• • • Evolution & Phylogeny

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  FastOMA

  Orthology inference at scale
• • • Evolution & Phylogeny
  • • Structural Biology

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  Phylogenetic tree from predicted protein structures