GeezerVison — Trex-online

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Tree inference from
incomplete matrices

Reticulogram inference

Antibiotic resistance HGT

Hybrids-Detection

Sequence alignment

Substitution models

Robinson and Foulds distance

Newick<->Matrix

Random tree generator

Documentation

Applications included

Windows and Mac
versions

Server load : 2.8%

Tree Inference

Please cite:
Boc, A., Diallo, Alpha B. and Makarenkov, V. (2012), T-REX: a web server for inferring, validating and visualizing phylogenetic trees and networks, Nucleic Acids Research, 40(W1), W573-W579.

Distance methods

Parsimony

Maximum Likelihood

Neighbor-Joining	[doc]
NINJA large-scale Neighbor Joining	[doc]
ADDTREE	[doc]
Unweighted Neighbor Joining	[doc]
Circular order reconstruction	[doc]
Weighted least-squares (MW)	[doc]
BIONJ	[doc]
FITCH (PHYLIP)	[doc]

DNAPARS (PHYLIP)	[doc]
PROTPARS (PHYLIP)	[doc]
PARS (PHYLIP)	[doc]
DOLLOP (PHYLIP)	[doc]

PHYML	[doc]
DNAML (PHYLIP)	[doc]
DNAMLK (PHYLIP)	[doc]
PROML (PHYLIP)	[doc]
PROMLK (PHYLIP)	[doc]
RAxML	[doc]

This site has been visited 692954 times since Friday, November 25, 2005.

Boc, A., Diallo, Alpha B. and Makarenkov, V. (2012), T-REX: a web server for inferring, validating and visualizing phylogenetic trees and networks, Nucleic Acids Research, 40(W1), W573-W579.

Copyright © 2005 Université du Québec à Montréal (UQAM)
Webmasters : Alix Boc and Alpha Boubacar Diallo