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Mapping-free software for fishing relevant reads in an RNA-Seq sample
C++
19
1
Lightweight String Graph Construction
C++
11
1
A graph aligner
Python
31
13
Adaptive haplotype assembly for efficiently leveraging high coverage in long reads
C++
13
7
General Parsimony Phylogeny models from Frequencies
Python
2
1
A novel pipeline for gene-structure prediction based on spliced alignment of transcript sequences (ESTs and mRNAs) against a genomic sequence
C
5
6
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Showing 10 of 75 repositories
bgfa-spec
Public
Specifications of the BGFA format
AlgoLab/bgfa-spec's past year of commit activity
Python
0
CC0-1.0
0
0
0
Updated Oct 15, 2026
pygfa
Public
A library to manage GFA files
AlgoLab/pygfa's past year of commit activity
Python
7
MIT
3
3
0
Updated Sep 22, 2026
pangebin
Public
Extracting plasmid contigs from Pangenome graphs of bacterial isolates.
AlgoLab/pangebin's past year of commit activity
Python
1
MIT
0
1
0
Updated Jul 1, 2026
RecGraph
Public
Optimal sequence-to-graph alignment with recombinations
AlgoLab/RecGraph's past year of commit activity
Rust
41
MIT
3
3
0
Updated Apr 28, 2026
pantas
Public
Differential quantification of alternative splicing events on spliced pangenome graphs
AlgoLab/pantas's past year of commit activity
Python
16
GPL-3.0
2
2
1
Updated Jan 30, 2026
AlgoLab/PangeBlocks-wide's past year of commit activity
Rust
0
MIT
0
0
0
Updated Jan 21, 2026
AlgoLab/forgenom_summerschool2025's past year of commit activity
HTML
0
MIT
0
0
0
Updated Oct 21, 2025
clib
Public
Forked from
clibs/clib
Package manager for the C programming language.
AlgoLab/clib's past year of commit activity
C
1
MIT
319
0
0
Updated Sep 29, 2025
AlgoLab/pangebin-doc's past year of commit activity
TeX
0
0
0
0
Updated Jul 4, 2025
cpm2025
Public
Combinatorial Pattern Matching 2025
AlgoLab/cpm2025's past year of commit activity
HTML
2
GPL-2.0
0
0
0
Updated Jun 23, 2025
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