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1. kundajelab/bpnet kundajelab/bpnet Public

   Toolkit to train base-resolution deep neural networks on functional genomics data and to interpret them

   Python 188 38

2. kipoi/kipoi kipoi/kipoi Public

   Kipoi's model zoo API

   Jupyter Notebook 243 40

3. kipoi/models kipoi/models Public

   Model zoo for genomics

   Python 175 58

4. kipoi/kipoiseq kipoi/kipoiseq Public

   Standard set of data-loaders for training and making predictions for DNA sequence-based models.

   Python 84 13

5. kopt kopt Public

   Hyper-parameter optimization for Keras

   Python 47 12

6. gagneurlab/concise gagneurlab/concise Public

   Concise: Keras extension for regulatory genomics

   Jupyter Notebook 36 13