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GeezerVison is showing github.com — Biomedical Informatics Research and Data Science @ Dartmouth

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  1. deepslide deepslide Public

    Code for the Nature Scientific Reports paper "Pathologist-level classification of histologic patterns on resected lung adenocarcinoma slides with deep neural networks." A sliding window framework f…

    Python 521 142

  2. HistoGAN HistoGAN Public

    Code for "Generative Image Translation for Data Augmentation in Colorectal Histopathology Images" full paper at ML4H Workshop at NeurIPS 2019.

    Python 71 19

  3. 3dMRISegmentation 3dMRISegmentation Public

    Code for NeuroImage: Clinical paper "Automatic post-stroke lesion segmentation on MR images using 3D residual convolutional neural network."

    Python 33 10

  4. medical-image-preprocessing medical-image-preprocessing Public

    Functions for pre-processing large images

    Python 12 4

  5. titan-rtx-benchmark titan-rtx-benchmark Public

    5 1

  6. MORE MORE Public

    Code for "Multi-Ontology Refined Embeddings (MORE): A Hybrid Multi-Ontology and Corpus-based Semantic Representation Model for Biomedical Concepts" in the Journal of Biomedical Informatics.

    Python 5 2

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Showing 10 of 15 repositories
  • PNN-MultiModal Public

    Multimodal deep learning framework integrating multiplex immunofluorescence imaging, spatial transcriptomics, and clinical metadata for prediction of brain tumor-related epilepsy in glioma.

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    BMIRDS/PNN-MultiModal's past year of commit activity
    Jupyter Notebook 0 GPL-3.0 0 0 0 Updated Sep 10, 2026
  • HistoStainAlign Public

    Code for "Cross-Modality Learning for Predicting IHC Biomarkers from H&E-Stained Whole-Slide Images"

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    BMIRDS/HistoStainAlign's past year of commit activity
    Python 2 GPL-3.0 2 0 0 Updated Aug 5, 2025
  • GramViT Public

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    BMIRDS/GramViT's past year of commit activity
    Python 1 GPL-3.0 2 0 0 Updated Oct 7, 2024
  • deepslide Public

    Code for the Nature Scientific Reports paper "Pathologist-level classification of histologic patterns on resected lung adenocarcinoma slides with deep neural networks." A sliding window framework for classification of high resolution whole-slide images, often microscopy or histopathology images.

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    BMIRDS/deepslide's past year of commit activity
    Python 521 GPL-3.0 142 0 0 Updated Jun 7, 2024
  • WSI-PLP Public

    DPool; Previously POPPSlide: Patient Outcome Prediction Pipeline using Whole Slide Images

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    BMIRDS/WSI-PLP's past year of commit activity
    Python 3 GPL-3.0 1 1 3 Updated Mar 28, 2024
  • SlidePreprocessing Public

    Extract tissues from WSI

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    BMIRDS/SlidePreprocessing's past year of commit activity
    Python 1 GPL-3.0 0 1 1 Updated Jan 18, 2024
  • Slide2Graph Public

    Graph Convolutional Networks for Whole-Slide Analysis in PyTorch

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    BMIRDS/Slide2Graph's past year of commit activity
    Python 4 GPL-3.0 1 0 0 Updated Jun 10, 2022
  • cell-heterogeneity-emtscore Public

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    BMIRDS/cell-heterogeneity-emtscore's past year of commit activity
    Python 1 4 0 0 Updated Mar 16, 2022
  • HistoGAN Public

    Code for "Generative Image Translation for Data Augmentation in Colorectal Histopathology Images" full paper at ML4H Workshop at NeurIPS 2019.

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    There was an error while loading. Please reload this page.

    BMIRDS/HistoGAN's past year of commit activity
    Python 71 GPL-3.0 19 0 0 Updated Feb 3, 2021
  • MORE Public

    Code for "Multi-Ontology Refined Embeddings (MORE): A Hybrid Multi-Ontology and Corpus-based Semantic Representation Model for Biomedical Concepts" in the Journal of Biomedical Informatics.

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    BMIRDS/MORE's past year of commit activity
    Python 5 GPL-3.0 2 0 0 Updated Oct 6, 2020
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