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Basic example of using OME-Zarr in a Nextflow pipeline
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Showing 10 of 23 repositories
ome-zarr-fiji-java
Public
Fiji/ImageJ plugin that brings OME-Zarr into everyday Fiji use: drag & drop, clipboard, menu and scripting, in ImageJ or BigDataViewer.
BioImageTools/ome-zarr-fiji-java's past year of commit activity
Java
10
BSD-2-Clause
7
27
4
Updated Nov 10, 2026
BioImageTools/zarr-convention-provenance's past year of commit activity
Groovy
1
Apache-2.0
1
0
0
Updated Nov 9, 2026
BioImageTools/bioimage-task-vocabulary's past year of commit activity
1
MIT
0
0
1
Updated Nov 9, 2026
BioImageTools/capability-manifest's past year of commit activity
TypeScript
4
0
0
0
Updated Nov 6, 2026
BioImageTools/ome-zarr-skills's past year of commit activity
Python
4
BSD-3-Clause
2
0
1
Updated Nov 6, 2026
BioImageTools/fractal-multistep-nextflow's past year of commit activity
Nextflow
0
BSD-3-Clause
0
0
0
Updated Nov 6, 2026
BioImageTools/nf-module-aggregator's past year of commit activity
Astro
2
0
0
0
Updated Nov 5, 2026
biomero-schema
Public
A spec for BIOMERO workflows developed at the GLOBIAS 2025 Hackathon
BioImageTools/biomero-schema's past year of commit activity
Python
1
Apache-2.0
1
2
0
Updated Jun 3, 2026
scijava-context-test
Public
The only purpose of this repo is to test a potential memory leak in scijava context
BioImageTools/scijava-context-test's past year of commit activity
Java
0
BSD-3-Clause
0
0
0
Updated Apr 14, 2026
BioImageTools/nextflow-modules's past year of commit activity
Nextflow
4
BSD-3-Clause
2
13
0
Updated Jan 28, 2026
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