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  1. ntRoot ntRoot Public

    🌳 Scalable ancestry from genomic data

    Python 15 1

  2. ntSynt ntSynt Public

    Detecting multi-genome synteny using minimizer graph mapping

    Python 118 3

  3. goldrush goldrush Public

    Linear-time de novo Long Read Assembler

    C++ 43 2

  4. ntEdit ntEdit Public

    ✏️ Genome assembly polishing & SNV detection

    C++ 74 10

  5. AMPlify AMPlify Public

    Attentive deep learning model for antimicrobial peptide prediction

    Python 64 16

  6. NanoSim NanoSim Public

    Nanopore sequence read simulator

    Python 313 67

Repositories

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Showing 10 of 97 repositories
  • ntRoot Public

    🌳 Scalable ancestry from genomic data

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    BirolLab/ntRoot's past year of commit activity
    Python 15 GPL-3.0 1 1 0 Updated Nov 11, 2026
  • btl Public

    🔬 Bioinformatics Technology Lab, BC Cancer Research Institute

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    BirolLab/btl's past year of commit activity
    HTML 2 3 0 2 Updated Nov 11, 2026
  • korus Public

    Probabilistic ancestry inference beyond variant calls

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    BirolLab/korus's past year of commit activity
    Python 1 GPL-3.0 0 0 0 Updated Nov 10, 2026
  • DynaMIC Public

    Calibrated Detection and Modelling of Antimicrobial Dose Responses

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    BirolLab/DynaMIC's past year of commit activity
    Python 0 GPL-3.0 0 0 0 Updated Nov 9, 2026
  • aahash_paper Public

    aaHash repo for manuscript

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    BirolLab/aahash_paper's past year of commit activity
    C++ 0 GPL-3.0 0 0 0 Updated Nov 3, 2026
  • aakomp Public

    Fast, alignment-free genome completeness estimator

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    BirolLab/aakomp's past year of commit activity
    C++ 6 GPL-3.0 1 0 0 Updated Nov 3, 2026
  • ntSynt-viz Public

    Multi-genome synteny block visualization tool

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    BirolLab/ntSynt-viz's past year of commit activity
    HTML 67 GPL-3.0 6 1 0 Updated Oct 30, 2026
  • aakomp_paper Public

    figure and data used to generate manuscript figures

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    BirolLab/aakomp_paper's past year of commit activity
    R 0 0 0 0 Updated Oct 30, 2026
  • LLM-Clinical-Trial-Annotator Public

    An LLM-based peptide clinical trial annotation tool/workflow.

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    BirolLab/LLM-Clinical-Trial-Annotator's past year of commit activity
    Python 1 0 0 0 Updated Oct 29, 2026
  • goldrush Public

    Linear-time de novo Long Read Assembler

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    BirolLab/goldrush's past year of commit activity
    C++ 43 GPL-3.0 2 4 2 Updated Oct 28, 2026
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