Using the geo, image, and data stacks to analyze spatial transcriptomics data

JuliaCon 2026 · Mainz, Germany

A Typst + Touying presentation, built on the Bonham Lab talk template.

• Instantiate the assets/general submodule: git submodule update --init --recursive
• Compile: typst compile --root . main.typ presentation.pdf
• Watch while editing: typst watch --root . main.typ presentation.pdf

Fonts: requires IBM Plex Sans/Serif/Mono installed system-wide (Arch: pacman -S ttf-ibm-plex). CI already handles this — see .github/workflows/*.yml.

assets/theme/bonham-theme.typ is the lab's Touying theme (see the template repo for the full rationale). This deck runs it in its dark "terminal" palette for the whole talk — main.typ swaps the theme's light/dark color arguments so #focus-slide[..] becomes the one deliberate light "paper" moment instead of the reverse.

images/ holds this talk's figures, referenced directly from main.typ (e.g. image("images/foo.png")).

To trigger the release GitHub Action (compiles the PDF + title-slide preview and attaches them to a GitHub release), create a release.