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CellProfiler CellProfiler Public

An open-source application for biological image analysis

Python 1.1k 429
CellProfiler-plugins CellProfiler-plugins Public

Community-contributed and experimental CellProfiler modules.

Python 78 75
CellProfiler-Analyst CellProfiler-Analyst Public

Open-source software for exploring and analyzing large, high-dimensional image-derived data.

Python 172 76
tutorials tutorials Public

CellProfiler tutorial pipelines and images

Jupyter Notebook 107 89
examples examples Public

Example CellProfiler pipelines.

Makefile 21 14

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tutorials Public
CellProfiler tutorial pipelines and images

CellProfiler/tutorials's past year of commit activity

Jupyter Notebook 107 BSD-3-Clause 89 3 1 Updated Nov 10, 2026
CellProfiler Public
An open-source application for biological image analysis

CellProfiler/CellProfiler's past year of commit activity

Python 1,143 429 288 26 Updated Nov 7, 2026
core Public
Core classes and components used by CellProfiler

CellProfiler/core's past year of commit activity

Python 7 27 0 0 Updated Nov 6, 2026
CellProfiler-plugins Public
Community-contributed and experimental CellProfiler modules.

CellProfiler/CellProfiler-plugins's past year of commit activity

Python 78 75 26 9 Updated Nov 4, 2026
centrosome Public
An open source image processing library

CellProfiler/centrosome's past year of commit activity

Python 20 38 31 1 Updated Oct 20, 2026
python-bioformats Public
Read and write life sciences file formats

CellProfiler/python-bioformats's past year of commit activity

Python 144 46 72 5 Updated Oct 3, 2026
python-javabridge Public Forked from LeeKamentsky/python-javabridge
Python wrapper for the Java Native Interface

CellProfiler/python-javabridge's past year of commit activity

Python 24 63 13 2 Updated Apr 8, 2026
distribution Public
Everything needed to build CellProfiler for your favorite environment.

CellProfiler/distribution's past year of commit activity

Python 4 6 13 0 Updated Mar 6, 2026
prokaryote Public
CellProfiler’s Java dependencies

CellProfiler/prokaryote's past year of commit activity

Java 3 GPL-3.0 11 3 2 Updated Feb 24, 2026
CellProfiler-Analyst Public
Open-source software for exploring and analyzing large, high-dimensional image-derived data.

CellProfiler/CellProfiler-Analyst's past year of commit activity

Python 172 76 72 1 Updated Jul 21, 2025

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