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  1. singscore singscore Public

    An R/Bioconductor package that implements a single-sample molecular phenotyping approach

    R 53 8

  2. standR standR Public

    Spatial transcriptomics analyses and decoding in R

    R 27 6

  3. vissE vissE Public

    An R/Bioconductor package to identify higher-order molecular phenotypes

    R 19 1

  4. msImpute msImpute Public

    Methods for label-free mass spectrometry proteomics

    R 17 1

  5. scDECAF scDECAF Public

    Querying cellular states and programs by learning representations of gene sets

    R 16 3

  6. hoodscanR hoodscanR Public

    R 14

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Showing 10 of 49 repositories
  • GeoMXAnalysisWorkflow Public

    GeoMX analysis workflow

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    DavisLaboratory/GeoMXAnalysisWorkflow's past year of commit activity
    R 9 5 8 0 Updated Nov 3, 2026
  • standR Public

    Spatial transcriptomics analyses and decoding in R

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    DavisLaboratory/standR's past year of commit activity
    R 27 6 2 0 Updated Nov 3, 2026
  • hoodscanR Public

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    DavisLaboratory/hoodscanR's past year of commit activity
    R 14 GPL-3.0 0 1 0 Updated Oct 29, 2026
  • smartid Public

    An R package for Scoring and Marker Selection Based on Modified TF-IDF

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    DavisLaboratory/smartid's past year of commit activity
    R 1 1 0 0 Updated Aug 21, 2026
  • mastR Public

    An R package for automatically screening cell type signature in specific tissue/organ/cancer.

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    DavisLaboratory/mastR's past year of commit activity
    R 7 1 0 0 Updated May 20, 2026
  • msImpute Public

    Methods for label-free mass spectrometry proteomics

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    DavisLaboratory/msImpute's past year of commit activity
    R 17 1 1 0 Updated May 13, 2026
  • scDECAF Public

    Querying cellular states and programs by learning representations of gene sets

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    DavisLaboratory/scDECAF's past year of commit activity
    R 16 3 1 0 Updated Nov 2, 2025
  • scDECAF-reproducibility Public

    Code to reproduce figures for scDECAF manuscript

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    DavisLaboratory/scDECAF-reproducibility's past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Nov 2, 2025
  • singscore Public

    An R/Bioconductor package that implements a single-sample molecular phenotyping approach

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    DavisLaboratory/singscore's past year of commit activity
    R 53 8 5 (1 issue needs help) 0 Updated Oct 13, 2025
  • emtdata Public

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    DavisLaboratory/emtdata's past year of commit activity
    R 2 GPL-3.0 3 1 0 Updated Nov 21, 2024
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