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  1. torchdrug torchdrug Public

    A powerful and flexible machine learning platform for drug discovery

    Python 1.6k 223

  2. ULTRA ULTRA Public

    A foundation model for knowledge graph reasoning

    Python 651 89

  3. GMNN GMNN Public

    Graph Markov Neural Networks

    Python 416 102

  4. GearNet GearNet Public

    GearNet and Geometric Pretraining Methods for Protein Structure Representation Learning, ICLR'2023 (https://arxiv.org/abs/2203.06125)

    Python 331 33

  5. NBFNet NBFNet Public

    Official implementation of Neural Bellman-Ford Networks (NeurIPS 2021)

    Python 240 34

  6. ConfGF ConfGF Public

    Implementation of Learning Gradient Fields for Molecular Conformation Generation (ICML 2021).

    Python 172 37

Repositories

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Showing 10 of 53 repositories
  • PerturbDiff Public

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    DeepGraphLearning/PerturbDiff's past year of commit activity
    Python 65 MIT 10 5 0 Updated Aug 23, 2026
  • MATH60629A_2025A Public Forked from denafiroozi/Machine-Learning-I

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    DeepGraphLearning/MATH60629A_2025A's past year of commit activity
    Jupyter Notebook 0 1 0 0 Updated Nov 28, 2025
  • Math80648A_2025A Public Forked from AndyJZhao/Math60630A_2024A

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    DeepGraphLearning/Math80648A_2025A's past year of commit activity
    SCSS 0 2 0 0 Updated Nov 28, 2025
  • HAX Public

    Overcoming Long-Context Limitations of State-Space Models via Context-Dependent Sparse Attention (NeurIPS 2025)

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    DeepGraphLearning/HAX's past year of commit activity
    Python 24 0 0 0 Updated Sep 30, 2025
  • GearNet Public

    GearNet and Geometric Pretraining Methods for Protein Structure Representation Learning, ICLR'2023 (https://arxiv.org/abs/2203.06125)

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    DeepGraphLearning/GearNet's past year of commit activity
    Python 331 MIT 33 24 0 Updated Jun 13, 2025
  • GearBind Public

    Pretrainable geometric graph neural network for antibody affinity maturation

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    DeepGraphLearning/GearBind's past year of commit activity
    Python 87 Apache-2.0 14 9 0 Updated Mar 18, 2025
  • scCello Public

    [NeurIPS 2024 Spotlight] A cell-ontology guided transcriptome foundation model

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    DeepGraphLearning/scCello's past year of commit activity
    Python 26 6 0 1 Updated Mar 12, 2025
  • ProteinTutorial_AAAI2025 Public

    https://deepgraphlearning.github.io/ProteinTutorial_AAAI2025/

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    DeepGraphLearning/ProteinTutorial_AAAI2025's past year of commit activity
    CSS 6 MIT 1 0 0 Updated Feb 27, 2025
  • ULTRA Public

    A foundation model for knowledge graph reasoning

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    DeepGraphLearning/ULTRA's past year of commit activity
    Python 651 MIT 89 4 0 Updated Feb 3, 2025
  • GraphAny Public

    GraphAny: Fully-inductive Node Classification on Arbitrary Graphs

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    DeepGraphLearning/GraphAny's past year of commit activity
    Python 160 MIT 16 0 1 Updated Feb 3, 2025
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