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1. broadinstitute/gatk broadinstitute/gatk Public

   Official code repository for GATK versions 4 and up

   Java 2k 630

2. Sentieon/Sentieon-cwl Sentieon/Sentieon-cwl Public

   CWL pipelines for the Sentieon tools

   Common Workflow Language 4 2

3. Sentieon/sentieon-docker Sentieon/sentieon-docker Public

   Example Dockerfiles for use with the Sentieon software

   Dockerfile 9 6

4. Sentieon/sentieon-scripts Sentieon/sentieon-scripts Public

   Helper scripts for biological data processing from Sentieon

   Shell 65 22

5. Sentieon/hap-eval Sentieon/hap-eval Public

   A VCF comparison engine for structual variant benchmarking

   Python 24 4

6. Sentieon/sentieon-cli Sentieon/sentieon-cli Public

   A command-line interface for Sentieon pipelines

   Python 17 7