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Analysis-Driver Analysis-Driver Public

Pipelines for Illumina HiSeqX demultiplexing, sequence QC and variant calling.

Python 8
Reporting-App Reporting-App Public

A Flask web app for presenting bcl2fastq and variant calling performance reports from Analysis-Driver

Python 4 1
EGCG-Project-Management EGCG-Project-Management Public

Tools for managing the data generated by EdinburghGenomics/Analysis-Driver, including review, delivery and deletion.

Python 1
clarity_scripts clarity_scripts Public

API and EPP scripts

Python 1
EGCG-Core EGCG-Core Public

Shared functionality across EGCG projects

Python 2
pyclarity-lims pyclarity-lims Public

Forked from SciLifeLab/genologics

Python interface to the GenoLogics LIMS server via its REST API.

Python 11 5

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NERC_EcologicalGenomics Public
Bioinformatics Workflow for NERC Ecological Genomics training 2023

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EdinburghGenomics/NERC_EcologicalGenomics's past year of commit activity

1 0 0 0 Updated Nov 12, 2025
illuminatus Public
The all-knowing, all-seeing, enlightened pipeline for Illumina run processing.

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EdinburghGenomics/illuminatus's past year of commit activity

Python 3 2 0 0 Updated Jul 2, 2025
hesiod Public
Reports on your Promethion (or other NanoPore) data.

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EdinburghGenomics/hesiod's past year of commit activity

Python 2 1 2 0 Updated Jun 12, 2025
smrtino Public
Run pipeline for PacBio Sequel SMRT cells

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EdinburghGenomics/smrtino's past year of commit activity

Python 1 1 2 0 Updated May 12, 2025
snakemake Public Forked from snakemake/snakemake
Fork of Snakemake for adding patches and fixes for EdGe

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EdinburghGenomics/snakemake's past year of commit activity

HTML 0 MIT 683 0 0 Updated Apr 8, 2025
snakemake-interface-executor-plugins Public Forked from snakemake/snakemake-interface-executor-plugins
This package provides a stable interface for interactions between Snakemake and its executor plugins.

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EdinburghGenomics/snakemake-interface-executor-plugins's past year of commit activity

Python 0 MIT 15 0 0 Updated Apr 8, 2025
snakemake-executor-plugin-cluster-generic Public Forked from snakemake/snakemake-executor-plugin-cluster-generic
Generic cluster executor for Snakemake

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EdinburghGenomics/snakemake-executor-plugin-cluster-generic's past year of commit activity

Python 0 MIT 11 0 0 Updated Apr 8, 2025
Analysis-Driver Public
Pipelines for Illumina HiSeqX demultiplexing, sequence QC and variant calling.

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EdinburghGenomics/Analysis-Driver's past year of commit activity

Python 8 0 12 1 Updated Dec 10, 2024
bashmocker Public
A Python helper for unit testing shell scripts.

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EdinburghGenomics/bashmocker's past year of commit activity

Python 0 1 0 0 Updated Dec 4, 2024
transfer_test_maker Public
Helps to make pathological test cases for FTP downloads

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EdinburghGenomics/transfer_test_maker's past year of commit activity

Python 0 0 0 0 Updated Oct 16, 2023

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