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  1. snakemake-wrappers snakemake-wrappers Public

    Forked from snakemake/snakemake-wrappers

    This is the development home of the Snakemake wrapper repository, see

    Python

  2. bulkpy bulkpy Public

    A helper library for managing bulk'omics data with mudata

    Python 1

  3. drop drop Public

    Forked from gagneurlab/drop

    Pipeline to find aberrant events in RNA-Seq data, useful for diagnosis of rare disorders

    Python

  4. ACMGuru ACMGuru Public

    Forked from DylanLawless/ACMGuru

    What good are standards if they are not automated?

    R

  5. snakemake snakemake Public

    Forked from snakemake/snakemake

    This is the development home of the workflow management system Snakemake. For general information, see

    Python

  6. crispr-ngs-pipline crispr-ngs-pipline Public archive

    A work-in-progress pipeline to identify cripsr off-target effects using somatic variant calling

    Python

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  • bioconda-recipes Public Forked from bioconda/bioconda-recipes

    Conda recipes for the bioconda channel.

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    FroeseLab/bioconda-recipes's past year of commit activity
    Shell 0 MIT 4,247 0 0 Updated Nov 9, 2026
  • snakemake Public Forked from snakemake/snakemake

    This is the development home of the workflow management system Snakemake. For general information, see

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    FroeseLab/snakemake's past year of commit activity
    Python 0 MIT 683 0 0 Updated Apr 9, 2026
  • snakemake-wrappers Public Forked from snakemake/snakemake-wrappers

    This is the development home of the Snakemake wrapper repository, see

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    FroeseLab/snakemake-wrappers's past year of commit activity
    Python 0 218 0 0 Updated Dec 11, 2025
  • mmaomics-sm Public

    A snakemake workflow to reproduce the mmaomics paper results from public data only.

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    FroeseLab/mmaomics-sm's past year of commit activity
    Python 0 MIT 0 0 0 Updated Sep 12, 2025
  • PROTRIDER Public Forked from gagneurlab/PROTRIDER

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    FroeseLab/PROTRIDER's past year of commit activity
    Python 0 5 0 0 Updated Jun 18, 2025
  • bulkpy Public

    A helper library for managing bulk'omics data with mudata

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    FroeseLab/bulkpy's past year of commit activity
    Python 0 MIT 1 0 1 Updated May 30, 2025
  • mudata Public Forked from scverse/mudata

    Multimodal Data (.h5mu) implementation for Python

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    FroeseLab/mudata's past year of commit activity
    Python 0 BSD-3-Clause 30 0 0 Updated Feb 11, 2025
  • drop Public Forked from gagneurlab/drop

    Pipeline to find aberrant events in RNA-Seq data, useful for diagnosis of rare disorders

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    FroeseLab/drop's past year of commit activity
    Python 0 MIT 57 0 0 Updated Jan 27, 2025
  • mthfr-and-friends Public

    A repository for the ap ms analysis of MTHFR

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    FroeseLab/mthfr-and-friends's past year of commit activity
    R 0 MIT 0 0 0 Updated Nov 4, 2024
  • bulkR Public

    Helpers for multi omics bulk analyses

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    FroeseLab/bulkR's past year of commit activity
    R 0 0 0 0 Updated Oct 25, 2024
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