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  1. redundans redundans Public

    Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.

    C++ 189 23

  2. perSVade perSVade Public

    perSVade: personalized Structural Variation detection

    Python 42 5

  3. jloh jloh Public

    A tool to extract LOH blocks from VCF, BAM and FASTA data

    Python 25 3

  4. haplotypo haplotypo Public

    This is the Haplotypo repository

    Python 22 5

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Showing 10 of 68 repositories
  • meTAline Public

    A snakemake pipeline for metagenomics analysis, it facilitates an efficient workflow to preprocess short reads metagenomics data: from read trimming and filtering, through host read subtraction to taxonomic classification using both k-mer and gene marker-based approaches, and functional profiling of the samples.

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    Gabaldonlab/meTAline's past year of commit activity
    Python 2 GPL-3.0 0 1 0 Updated Nov 9, 2026
  • Cpara_complex_evol Public

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    Gabaldonlab/Cpara_complex_evol's past year of commit activity
    Python 0 0 0 0 Updated Oct 16, 2026
  • RepDBmaker Public

    Snakemake pipeline designed for the automated construction of large scale protein sequence databases.

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    Gabaldonlab/RepDBmaker's past year of commit activity
    Python 0 MIT 0 0 0 Updated Sep 30, 2026
  • r_fluvialis Public

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    Gabaldonlab/r_fluvialis's past year of commit activity
    R 0 0 0 0 Updated Sep 3, 2026
  • B-GUT-decontamination Public

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    Gabaldonlab/B-GUT-decontamination's past year of commit activity
    R 0 0 0 0 Updated Aug 13, 2026
  • redundans Public

    Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.

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    Gabaldonlab/redundans's past year of commit activity
    C++ 189 GPL-3.0 23 0 0 Updated Jul 30, 2026
  • decon Public

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    Gabaldonlab/decon's past year of commit activity
    HTML 0 0 0 0 Updated Jul 17, 2026
  • MesoNeoSelection Public

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    Gabaldonlab/MesoNeoSelection's past year of commit activity
    Python 0 GPL-3.0 1 0 0 Updated Jul 16, 2026
  • Q-PHAST Public

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    Gabaldonlab/Q-PHAST's past year of commit activity
    Python 2 2 0 0 Updated Jul 2, 2026
  • LECAdonors Public

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    Gabaldonlab/LECAdonors's past year of commit activity
    R 1 GPL-3.0 0 0 0 Updated Apr 27, 2026
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