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GeezerVison is showing github.com — German BioImaging - GMB e.V.

README.md

German BioImaging

German BioImaging – Gesellschaft für Mikroskopie und Bildanalyse e.V. (GerBI-GMB e.V.) unites scientists, students, core facilities, and industry partners around key topics in microscopy, image analysis, and research data management. We are dedicated to shaping the bioimaging landscape by actively participating in various national and international research projects, and supporting our members with teaching and training in Germany and beyond.

The Research Software Engineering unit supports GerBI mission through development of open-source software and standards for microscopy data, and a core contributor in the Open Microscopy Environment(OME) community, particularly in the development of OME-Zarr, a next-generation file format (NGFF).

Resources:

  • GerBI team on the OME website
  • GerBI projects

Popular repositories Loading

  1. omero-rdf omero-rdf Public

    A plugin for exporting RDF from OMERO

    Python 16 13

  2. RDM4mic RDM4mic Public

    RDM4mic working group - research data management for microscopy data

    9 1

  3. omero_fileserver-import omero_fileserver-import Public

    Script to import images from fileserver mounted on an OMERO server

    Jupyter Notebook 8 2

  4. webtagging webtagging Public archive

    Extensions to OMERO.web to enhance tagging and searching

    JavaScript 4 5

  5. oztest oztest Public

    WIP: Conformance test cases and tools for OME-Zarr

    Python 4 3

  6. nfdi4bioimage nfdi4bioimage Public

    3

Repositories

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Showing 10 of 42 repositories
  • ome-zarr-resources Public

    Status dashboard for OME-Zarr resources

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    German-BioImaging/ome-zarr-resources's past year of commit activity
    HTML 0 0 1 0 Updated Nov 12, 2026
  • omero-autotag Public

    Extensions to OMERO.web to enhance tagging

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    German-BioImaging/omero-autotag's past year of commit activity
    JavaScript 0 AGPL-3.0 4 5 1 Updated Nov 11, 2026
  • nfdi-formats Public

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    German-BioImaging/nfdi-formats's past year of commit activity
    Python 0 CC0-1.0 1 1 0 Updated Nov 11, 2026
  • ome-zarr-acknowledgments Public

    People that have contributed to OME-Zarr at some point

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    German-BioImaging/ome-zarr-acknowledgments's past year of commit activity
    HTML 3 12 13 0 Updated Nov 9, 2026
  • oztest Public

    WIP: Conformance test cases and tools for OME-Zarr

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    German-BioImaging/oztest's past year of commit activity
    Python 4 3 10 4 Updated Nov 1, 2026
  • omero_fileserver-import Public

    Script to import images from fileserver mounted on an OMERO server

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    German-BioImaging/omero_fileserver-import's past year of commit activity
    Jupyter Notebook 8 GPL-3.0 2 1 1 Updated Oct 27, 2026
  • omero-tagsearch Public

    Extensions to OMERO.web to enhance image/dataset/project filtering from tags.

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    German-BioImaging/omero-tagsearch's past year of commit activity
    HTML 0 AGPL-3.0 4 5 4 Updated Oct 23, 2026
  • omero_monitoring_scripts Public

    Bash scripts executed periodically to send alerts to a mattermost channel

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    German-BioImaging/omero_monitoring_scripts's past year of commit activity
    Shell 0 0 0 0 Updated Oct 21, 2026
  • gide_network_viz Public

    A network viz of the foundingGIDE metadata

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    German-BioImaging/gide_network_viz's past year of commit activity
    HTML 0 1 0 0 Updated Oct 13, 2026
  • RDM4mic Public

    RDM4mic working group - research data management for microscopy data

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    German-BioImaging/RDM4mic's past year of commit activity
    9 CC-BY-4.0 1 1 0 Updated Sep 30, 2026
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@joshmoore @Tom-TBT @CFGrote @sukunis

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