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  1. PHATE PHATE Public

    PHATE (Potential of Heat-diffusion for Affinity-based Transition Embedding) is a tool for visualizing high dimensional data.

    Python 562 82

  2. MAGIC MAGIC Public

    MAGIC (Markov Affinity-based Graph Imputation of Cells), is a method for imputing missing values restoring structure of large biological datasets.

    Jupyter Notebook 387 106

  3. SAUCIE SAUCIE Public

    Python 102 27

  4. MELD MELD Public

    Quantifying experimental perturbations at single cell resolution

    Python 118 10

  5. Multiscale_PHATE Multiscale_PHATE Public

    Creating multi-resolution embeddings and clusters from high dimensional data

    Jupyter Notebook 59 11

  6. MIOFlow MIOFlow Public

    Jupyter Notebook 43 10

Repositories

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Showing 10 of 111 repositories
  • PhenoGS Public

    Pheno-GS: Phenoscape-scale Geodesic Sinkhorn

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    KrishnaswamyLab/PhenoGS's past year of commit activity
    Python 0 0 0 0 Updated Nov 11, 2026
  • scShapeBench Public

    scShapeBench is a benchmarking dataset to recover shapes from single cell data.

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    KrishnaswamyLab/scShapeBench's past year of commit activity
    Python 2 0 0 0 Updated Nov 9, 2026
  • geomancer Public

    The Krishnaswamy Lab's analysis layer, built on manyruns by Latent Reasoning Works

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    KrishnaswamyLab/geomancer's past year of commit activity
    Python 2 1 14 4 Updated Nov 1, 2026
  • scReebTower Public

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    KrishnaswamyLab/scReebTower's past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Oct 25, 2026
  • RNAGenScape Public

    [๐—ก๐—ฒ๐˜‚๐—ฟ๐—œ๐—ฃ๐—ฆ ๐Ÿฎ๐Ÿฌ๐Ÿฎ๐Ÿฒ] RNAGenScape: property-guided, optimized generation of mRNA sequences with manifold Langevin dynamics

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    KrishnaswamyLab/RNAGenScape's past year of commit activity
    Python 5 0 0 0 Updated Oct 19, 2026
  • MIOFlow Public

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    KrishnaswamyLab/MIOFlow's past year of commit activity
    Jupyter Notebook 43 10 4 1 Updated Oct 8, 2026
  • ImmunoStruct Public

    [๐ง๐š๐ญ๐ฎ๐ซ๐ž ๐ฆ๐š๐œ๐ก๐ข๐ง๐ž ๐ข๐ง๐ญ๐ž๐ฅ๐ฅ๐ข๐ ๐ž๐ง๐œ๐ž] ImmunoStruct enables multimodal deep learning for immunogenicity prediction

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    KrishnaswamyLab/ImmunoStruct's past year of commit activity
    Python 53 20 2 0 Updated Oct 5, 2026
  • BrainDyn-Neural-Sheaf-ODE-Forecasting-Brain-Dynamics Public

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    KrishnaswamyLab/BrainDyn-Neural-Sheaf-ODE-Forecasting-Brain-Dynamics's past year of commit activity
    Python 0 1 0 0 Updated Oct 1, 2026
  • RhinoNet Public

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    KrishnaswamyLab/RhinoNet's past year of commit activity
    Python 3 1 0 0 Updated Sep 26, 2026
  • cflows Public

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    KrishnaswamyLab/cflows's past year of commit activity
    Jupyter Notebook 2 0 0 0 Updated Sep 2, 2026
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