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PHATE (Potential of Heat-diffusion for Affinity-based Transition Embedding) is a tool for visualizing high dimensional data.
Python
562
82
MAGIC (Markov Affinity-based Graph Imputation of Cells), is a method for imputing missing values restoring structure of large biological datasets.
Jupyter Notebook
387
106
Quantifying experimental perturbations at single cell resolution
Python
118
10
Creating multi-resolution embeddings and clusters from high dimensional data
Jupyter Notebook
59
11
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Showing 10 of 111 repositories
PhenoGS
Public
Pheno-GS: Phenoscape-scale Geodesic Sinkhorn
KrishnaswamyLab/PhenoGS's past year of commit activity
Python
0
0
0
0
Updated Nov 11, 2026
scShapeBench
Public
scShapeBench is a benchmarking dataset to recover shapes from single cell data.
KrishnaswamyLab/scShapeBench's past year of commit activity
Python
2
0
0
0
Updated Nov 9, 2026
geomancer
Public
The Krishnaswamy Lab's analysis layer, built on manyruns by Latent Reasoning Works
KrishnaswamyLab/geomancer's past year of commit activity
Python
2
1
14
4
Updated Nov 1, 2026
KrishnaswamyLab/scReebTower's past year of commit activity
Jupyter Notebook
0
0
0
0
Updated Oct 25, 2026
RNAGenScape
Public
[๐ก๐ฒ๐๐ฟ๐๐ฃ๐ฆ ๐ฎ๐ฌ๐ฎ๐ฒ] RNAGenScape: property-guided, optimized generation of mRNA sequences with manifold Langevin dynamics
KrishnaswamyLab/RNAGenScape's past year of commit activity
Python
5
0
0
0
Updated Oct 19, 2026
KrishnaswamyLab/MIOFlow's past year of commit activity
Jupyter Notebook
43
10
4
1
Updated Oct 8, 2026
ImmunoStruct
Public
[๐ง๐๐ญ๐ฎ๐ซ๐ ๐ฆ๐๐๐ก๐ข๐ง๐ ๐ข๐ง๐ญ๐๐ฅ๐ฅ๐ข๐ ๐๐ง๐๐] ImmunoStruct enables multimodal deep learning for immunogenicity prediction
KrishnaswamyLab/ImmunoStruct's past year of commit activity
Python
53
20
2
0
Updated Oct 5, 2026
KrishnaswamyLab/BrainDyn-Neural-Sheaf-ODE-Forecasting-Brain-Dynamics's past year of commit activity
Python
0
1
0
0
Updated Oct 1, 2026
KrishnaswamyLab/RhinoNet's past year of commit activity
Python
3
1
0
0
Updated Sep 26, 2026
KrishnaswamyLab/cflows's past year of commit activity
Jupyter Notebook
2
0
0
0
Updated Sep 2, 2026
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