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Name		Name	Last commit message	Last commit date
assets		assets
autometa_genome_binning_parameter_sweep		autometa_genome_binning_parameter_sweep
bin		bin
conf		conf
docs		docs
genome_binning		genome_binning
lib		lib
modules		modules
subworkflows/local		subworkflows/local
taxon_binning		taxon_binning
workflows		workflows
.gitignore		.gitignore
CHANGELOG.md		CHANGELOG.md
CITATIONS.md		CITATIONS.md
CODE_OF_CONDUCT.md		CODE_OF_CONDUCT.md
LICENSE		LICENSE
README.md		README.md
main.nf		main.nf
modules.json		modules.json
nextflow.config		nextflow.config
nextflow_schema.json		nextflow_schema.json

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MetaBenchmarks: taxon-binning and genome-binning workflows

Table of Contents

Datasets

Information regarding datasets (metagenome assemblies & reads) download and formatting for taxon-binning and genome-binning benchmarks.

Databases

Information regarding database download and formatting for taxon-binning and genome-binning tools.

Genome Binning Parameter Sweep

Autometa parameter sweep benchmarking against CAMI2 datasets and simulated communities.

Genome Binning Benchmarking

Genome binning workflows using Autometa and external tools against simulated communities.

Taxon Binning Benchmarking

Taxon binning workflows using Autometa and external tools against CAMI2 datasets and simulated communities.

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Repository containing metagenomics benchmarking modules

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