Maxime U Garcia maxulysse

Achievements

maxulysse/README.md

I'm a bioinformatician, from Marseille 🇫🇷 , living in Stockholm 🇸🇪
I'm interested in Reproducible Research (and obviously open-source), Cancer, Automation, Containers, Data Integration, Visualization and much more...
I enjoy doing pipelines with Nextflow, that are reproducible using Conda, Docker, Singularity... and can run anywhere, including AWS, GCP, Azure...
I'm part of the core team that administrates the @nf-core community

I share the occasional blog post and my presentations on my own Astro website
I sometimes share informations on LinkedIn
I keep track of my publications with ORCID and Google Scholar
I μblog, but mainly RT on BlueSky, Mastodon or Twitter/X.
I share food and cats pictures on Instagram with sometimes an occasional landscape
If you find anything in my repo useful and want to say thanks, you can Buy me a coffee

nf-core/sarek nf-core/sarek Public

Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing

Nextflow 621 565
nf-core/rnavar nf-core/rnavar Public

gatk4 RNA variant calling pipeline

Nextflow 62 50
nf-core/seqinspector nf-core/seqinspector Public

Dedicated QC-only pipeline for sequencing data. The pipeline will run a (potentially large) set of QC tools and can output global and group specific Multiqc reports. The pipeline is targeting core …

Nextflow 28 46
nf-core/references nf-core/references Public

nf-core/references is a bioinformatics pipeline that build references, for multiple use cases

Nextflow 24 5
maxulysse.github.io maxulysse.github.io Public

My own personal website

Astro 3 4
nf-arts nf-arts Public

Generative art from your Nextflow runs

Groovy 5

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