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pISA-tree: Standard project directory tree ( ISA framework compliant )
Batchfile
7
3
A Python package for analyses of Boolean and semi-quantitative Boolean networks.
Jupyter Notebook
Scripts and utilities for leveraging SKM resources
Jupyter Notebook
3
Potato ‘omics data analysis pipelines
HTML
5
4
understanding endophyte/plant relationships
HTML
Potato yield can be predicted by using drone-captured and environmental measurements early in the growing season
Jupyter Notebook
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Showing 10 of 57 repositories
LR-DESIREE-reproducibility
Public
Reproducibility notebooks for: Haplotype-resolved long-read transcriptomics uncovers allele-specific heat stress induction and a nucleus-targeted chaperone isoform in potato
NIB-SI/LR-DESIREE-reproducibility's past year of commit activity
Jupyter Notebook
0
0
0
0
Updated Nov 12, 2026
skm-pss-export
Public
Export adapters from PSS neo4j db to other formats
NIB-SI/skm-pss-export's past year of commit activity
Python
0
MIT
0
3
0
Updated Nov 10, 2026
BoolDog
Public
A Python package for analyses of Boolean and semi-quantitative Boolean networks.
NIB-SI/BoolDog's past year of commit activity
Jupyter Notebook
0
GPL-3.0
0
8
1
Updated Nov 4, 2026
skm-translate
Public
Translation pipeline from SKM to crop and crop wild relatives
NIB-SI/skm-translate's past year of commit activity
HTML
0
MIT
1
0
0
Updated Oct 20, 2026
promoteR
Public
Large scale promotor sequence extraction in R
NIB-SI/promoteR's past year of commit activity
HTML
1
MIT
0
0
0
Updated Oct 20, 2026
SPOZNAJ
Public
Priprava, urejanje in obdelava podatkov s prog. orodji
NIB-SI/SPOZNAJ's past year of commit activity
HTML
0
CC0-1.0
0
0
0
Updated Oct 20, 2026
NIB-SI/multiOmics-integration's past year of commit activity
HTML
5
MIT
4
0
0
Updated Oct 20, 2026
skm-tools
Public
Scripts and utilities for leveraging SKM resources
NIB-SI/skm-tools's past year of commit activity
Jupyter Notebook
3
GPL-3.0
0
1
1
Updated Oct 20, 2026
unitato
Public
UniTato: evidence-based unification of potato gene models
NIB-SI/unitato's past year of commit activity
HTML
1
MIT
0
0
0
Updated Oct 20, 2026
skm-ckn
Public
The Comprehensive Knowledge Network of SKM
NIB-SI/skm-ckn's past year of commit activity
Jupyter Notebook
0
0
0
0
Updated Oct 20, 2026
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