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1. CyteArc CyteArc Public

   Fast, out-of-core single-cell analysis in Python for RNA, ATAC, protein, and multi-omic data, scaling to 100M+ cells. Mount remote datasets, work within a memory budget, and trace every result thro…

   Python 48 2

2. CyteType CyteType Public

   Multi-agent LLM driven cell type annotation for single-cell RNA-Seq data

   Python 139 15

3. CytePool CytePool Public

   Test which genes, cell types and pathways change between conditions in single-cell and bulk omics data.

   Python 2

4. CyteBase CyteBase Public

   Python 1

5. CyteTypeR CyteTypeR Public

   Multi-agent LLM driven cell type annotation for single-cell RNA-Seq data

   R 41 2

6. CyteOnto CyteOnto Public

   Automated semantic comparison of cell type annotations

   Python 7 2