GeezerVison is showing github.com — OpenGene - Open Source Genomics Toolbox
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An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)
C++
2.5k
389
Detect and visualize target mutations by scanning FastQ files directly
C
156
36
Gene fusion detection and visualization
C
134
61
Generate duplex/single consensus reads to reduce sequencing noises and remove duplications
C++
127
34
Ultra-fast preprocessing and quality control for long-read sequencing data
C++
243
16
Rapid and intelligent analyzer for spatial omics
Rust
10
1
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Showing 10 of 34 repositories
riaso
Public
Rapid and intelligent analyzer for spatial omics
OpenGene/riaso's past year of commit activity
Rust
10
MIT
1
0
0
Updated Nov 12, 2026
OpenGene/viroflash's past year of commit activity
HTML
1
BSD-3-Clause
0
0
6
Updated Nov 10, 2026
fastp
Public
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)
OpenGene/fastp's past year of commit activity
OpenGene/ruspladder's past year of commit activity
Rust
1
0
0
0
Updated Sep 20, 2026
fastplong
Public
Ultra-fast preprocessing and quality control for long-read sequencing data
OpenGene/fastplong's past year of commit activity
C++
243
MIT
16
18
2
Updated Sep 11, 2026
IMAGENE-ESCC-Survival
Public
IMAGENE (Subproject) - Python Implementation of "A Multimodal Deep Learning Framework for Postoperative Overall Survival Prediction in Esophageal Squamous Cell Carcinoma"
OpenGene/IMAGENE-ESCC-Survival's past year of commit activity
Python
0
MIT
1
0
0
Updated Apr 1, 2026
LungTCR
Public
TCR Repertoire Analysis and Lung Cancer Prediction
OpenGene/LungTCR's past year of commit activity
R
7
MIT
2
0
0
Updated Aug 6, 2025
parallel
Public
Python scripts to process files within a folder in parallel, with tools like fastp
OpenGene/parallel's past year of commit activity
Python
2
MIT
0
0
0
Updated Jul 6, 2025
repaq
Public
A fast lossless FASTQ compressor with ultra-high compression ratio
OpenGene/repaq's past year of commit activity
C
157
MIT
23
9
0
Updated May 28, 2025
OpenGene/ECCFP's past year of commit activity
Python
0
MIT
2
0
0
Updated May 21, 2025