DEBBIE- database of biomedical materials ProjectDebbie

DEBBIE is an EU funded, MSCA-IF project to automatically curate biocompatibility data from the biomedical literature into an open-access database

Achievements

DEBBIE_pipeline DEBBIE_pipeline Public

A pipeline for the extraction of information about biomaterials from PubMed abstracts into a MongoDB collection

Nextflow 5 1
Ontology_DEB Ontology_DEB Public

The Device, Experimental scaffolds and medical Device ontology (DEB)

4 1
OWL2DICT OWL2DICT Public

A tool for converting owl ontologies to a dictionary object with user-selected classes

Python 2
gold_standard_set gold_standard_set Public

PMIDs of the gold standard set for 'biocompatibility'

1
ProjectDebbie.github.io ProjectDebbie.github.io Public

Project DEBBIE pages

HTML 1 1
pubmed_retrieval pubmed_retrieval Public

python code to rertieve abstracts from pubmed

Python 1

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