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Variational autoencoder for metagenomic binning
Python
335
51
MOVE (Multi-Omics Variational autoEncoder) for integrating multi-omics data and identifying cross modal associations
Jupyter Notebook
100
34
Downstream processing of VAMB binning for Viral Elucidation
Python
56
7
Imputing proteomics data using deep learning models
Jupyter Notebook
35
3
PlasMAAG is a tool to recover plasmids and organisms from metagenomic samples
Python
34
5
SLIM is a small bilinear model that uses gene embeddings (e.g. STRING) to predict single-cell genetic perturbation responses.
Python
11
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Showing 10 of 46 repositories
MOVE
Public
MOVE (Multi-Omics Variational autoEncoder) for integrating multi-omics data and identifying cross modal associations
RasmussenLab/MOVE's past year of commit activity
Jupyter Notebook
100
MIT
34
13
2
Updated Nov 3, 2026
PlasMAAG
Public
PlasMAAG is a tool to recover plasmids and organisms from metagenomic samples
RasmussenLab/PlasMAAG's past year of commit activity
Python
34
MIT
5
1
0
Updated Nov 2, 2026
tracehr
Public
TracEHR is an autoregressive transformer framework for electronic health records (MEDS) to do model pretraining, event forecasting, extract patient embeddings and predict outcomes.
RasmussenLab/tracehr's past year of commit activity
Python
3
Apache-2.0
0
0
0
Updated Oct 19, 2026
integrative_post_gwas_methods_course
Public
Course material and notes for the PhD course "Integrative Post-GWAS Methods: Advanced Statistics, Functional Genomics, and Machine Learning" w. Ditte Demontis Group
RasmussenLab/integrative_post_gwas_methods_course's past year of commit activity
Jupyter Notebook
0
0
0
0
Updated Aug 26, 2026
RasmussenLab/V2F's past year of commit activity
Jupyter Notebook
0
0
0
0
Updated Aug 20, 2026
AugMent
Public
Contrastive alignment transfers proteomic disease predictive signals to metabolomics
RasmussenLab/AugMent's past year of commit activity
Python
4
MIT
0
0
0
Updated Aug 18, 2026
SLIM
Public
SLIM is a small bilinear model that uses gene embeddings (e.g. STRING) to predict single-cell genetic perturbation responses.
RasmussenLab/SLIM's past year of commit activity
Python
11
MIT
0
0
0
Updated Aug 18, 2026
pimms
Public
Imputing proteomics data using deep learning models
RasmussenLab/pimms's past year of commit activity
Jupyter Notebook
35
GPL-3.0
3
5
1
Updated Jul 8, 2026
DoBSeqWF
Public
Workflow for analysing two-dimensional overlapped pooled sequencing data
RasmussenLab/DoBSeqWF's past year of commit activity
Nextflow
2
MIT
0
0
0
Updated Jun 27, 2026
RasmussenLab/datainmedicine's past year of commit activity
Jupyter Notebook
0
MIT
0
0
0
Updated May 19, 2026
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