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README.md

Welcome to SAFEHR

SAFEHR (pronounced simply as safer) is our Secure/Anonymised Framework for Electronic Health Record data at UCLH. We're a partnership between UCL and UCLH supported and funded by the UCLH Biomedical Research Centre.

If you're interested in learning more, then please drop by the Institute of Health Informatics (IHI) at 222 Euston Road, or drop us an email.

We manage and maintain software to support health data reseearch.

  • EMAP: The Experimental Medicine Application Platform (EMAP) produces a near real-time database containing clinical data for research and dashboard development within UCLH.
  • PIXL is a system for extracting, linking and de-identifying DICOM imaging data, structured EHR data and free-text data from radiology reports at UCLH.
  • FlowEHR is an open-source platform for iterative, safe & reproducible development & deployment of data science solutions inside the NHS.

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  1. FlowEHR FlowEHR Public template

    FlowEHR is a safe, secure & cloud-native development & deployment platform for digital healthcare research & innovation.

    HCL 16 12

  2. PIXL PIXL Public

    PIXL Image eXtraction Laboratory

    Python 9 4

  3. emap emap Public

    Near real-time clinical database for research and innovation

    Java 4 3

  4. starter-guide starter-guide Public

    Starter guide for working with SAFEHR-data

    Jupyter Notebook 1

Repositories

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Showing 10 of 54 repositories
  • omopcat Public

    Summary of OMOP data and display in a public data catalogue

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    SAFEHR-data/omopcat's past year of commit activity
    R 2 Apache-2.0 0 23 2 Updated Nov 12, 2026
  • datafaker Public Forked from alan-turing-institute/sqlsynthgen

    Synthetic data for SQL databases

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    SAFEHR-data/datafaker's past year of commit activity
    Python 6 MIT 4 50 3 Updated Nov 12, 2026
  • PIXL Public

    PIXL Image eXtraction Laboratory

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    SAFEHR-data/PIXL's past year of commit activity
    Python 9 Apache-2.0 4 28 17 Updated Nov 9, 2026
  • waveform-controller Public

    A controller for processing waveform messages on a rabbitmq queue

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    SAFEHR-data/waveform-controller's past year of commit activity
    Python 0 GPL-3.0 2 27 1 Updated Nov 2, 2026
  • camino-pharmacy-dashboard Public

    A small demonstrator dashboard for pharmacists served by Camino data.

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    SAFEHR-data/camino-pharmacy-dashboard's past year of commit activity
    Python 0 MIT 0 0 2 Updated Nov 1, 2026
  • omop-carpentries Public

    Lesson on OMOP

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    SAFEHR-data/omop-carpentries's past year of commit activity
    R 1 1 12 1 Updated Oct 17, 2026
  • MESA-Validate Public Forked from londonaicentre/MESA-Validate

    Streamlit validation app for LLM outputs generated via the MESA (Medical-concept Extraction with Schema Alignment) framework for fine-tuned models.

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    SAFEHR-data/MESA-Validate's past year of commit activity
    Python 0 2 0 0 Updated Oct 1, 2026
  • omop-vocabs-processed Public

    Metadata for working with OMOP data at UCLH, e.g. vocabularies

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    SAFEHR-data/omop-vocabs-processed's past year of commit activity
    R 2 1 1 0 Updated Sep 23, 2026
  • emap Public

    Near real-time clinical database for research and innovation

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    SAFEHR-data/emap's past year of commit activity
    Java 4 3 50 8 Updated Sep 11, 2026
  • book-of-radix Public

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    SAFEHR-data/book-of-radix's past year of commit activity
    1 0 0 0 Updated Sep 5, 2026
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@jongillham @martinpeck @samcunliffe @jjgriff93 @damoodamoo @milanmlft @t-young31 @jedheaj314 @anastasiakuzn @tanya-borisova @phoevos

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