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An modular and extensible app for visualization of mass spectrometry data and optimization of data acquisition.
R
27
12
DART-ID: retention time alignment and peptide identification confidence updates
Python
19
4
Forked from nslavov/HIquant
HIquant: An algorithm for quantifying homologous proteins and proteoforms from bottom-up mass-spec data
Python
3
1
Forked from afranks86/tissue-ptr
Code for analyzing post-transcriptional regulation across human tissues (Franks et al., 2017 DOI: 10.1371/journal.pcbi.1005535)
R
4
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Showing 10 of 31 repositories
SlavovLab/Single-nucleus-proteomics's past year of commit activity
HTML
0
MIT
1
0
0
Updated Nov 11, 2026
multiDIA
Public
Scalable, proteoform-resolved proteomics using multiDIA for neurodegenerative disease
SlavovLab/multiDIA's past year of commit activity
Python
1
0
0
0
Updated Oct 21, 2026
PBMC_covariation
Public
Code repository for reproducing analyses in 2026_Khoury_et _al.
SlavovLab/PBMC_covariation's past year of commit activity
R
0
1
1
0
Updated Sep 15, 2026
decode
Public
Computational pipeline for quantifying amino acid substitutions from alternate RNA decoding
SlavovLab/decode's past year of commit activity
Jupyter Notebook
9
0
0
0
Updated Aug 11, 2026
EMT_TGFB_2023
Public
Dynamics of single-cell protein covariation during EMT. Analysis of TGF-B induced EMT in MCF10A cells using nPoP and SCoPE2.
SlavovLab/EMT_TGFB_2023's past year of commit activity
R
0
1
1
1
Updated Jun 20, 2026
DO-MS
Public
An modular and extensible app for visualization of mass spectrometry data and optimization of data acquisition.
SlavovLab/DO-MS's past year of commit activity
R
27
MIT
12
5
12
Updated May 3, 2026
sc_metabolic_pulse
Public
Analysis of protein synthesis and degradation in single cell cells based on in vivo metabolic pulse with stable heavy isotopes
SlavovLab/sc_metabolic_pulse's past year of commit activity
R
3
0
0
0
Updated Feb 13, 2026
early-stage-embryos
Public
Here you will find scripts and related files that are behind analyses presented in "Proteome asymmetry in mouse & human embryos before fate specification"".
SlavovLab/early-stage-embryos's past year of commit activity
R
0
MIT
0
0
0
Updated Nov 29, 2025
QuantQC
Public
QuantQC is a package for quality control (QC) of single-cell proteomics data. It is optimized to work with nPOP, a method for massively parallel sample preparation on glass slides.
SlavovLab/QuantQC's past year of commit activity
HTML
8
2
2
0
Updated Jul 22, 2025
Protein-Clearance
Public
Analysis from Leduc and Slavov (2025): Protein degradation and growth dependent dilution substantially shape mammalian proteomes
SlavovLab/Protein-Clearance's past year of commit activity
R
2
0
0
0
Updated May 4, 2025
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