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1. parklab/emsar parklab/emsar Public

   EMSAR quantifies transcripts from RNA-seq data (Citation : Lee et al., BMC Bioinformatics 2015, 16:278, http://www.biomedcentral.com/1471-2105/16/278)

   C 8 1

2. 4dn-dcic/tibanna 4dn-dcic/tibanna Public

   Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integration Center) to process data. Tibanna supports CWL/WDL (w/ …

   Python 73 28

3. 4dn-dcic/pairix 4dn-dcic/pairix Public

   1D/2D indexing and querying on bgzipped text file with a pair of genomic coordinates

   C 94 15

4. 4dn-dcic/Rpairix 4dn-dcic/Rpairix Public

   R binder for pairix - 2D/1D genomic indexing and querying on bgzipped text file

   C 8 4

5. 4dn-dcic/docker-4dn-hic 4dn-dcic/docker-4dn-hic Public

   Docker for 4DN Hi-C processing pipeline

   Common Workflow Language 63 17

6. parklab/NGSCheckMate parklab/NGSCheckMate Public

   Software program for checking sample matching for NGS data

   Python 146 57